Wall clock time and date at job start Mon Mar 30 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46874 * 2 1 4 4 C 1.38819 * 119.99219 * 125.00362 * 3 2 1 5 5 C 1.38559 * 118.04154 * 180.02562 * 4 3 2 6 6 C 1.39480 * 117.89961 * 359.97438 * 5 4 3 7 7 N 1.39053 * 120.15178 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00221 * 0.02562 * 7 6 5 9 9 H 1.09003 * 109.47172 * 34.99512 * 8 7 6 10 10 C 1.53004 * 109.46792 * 274.99803 * 8 7 6 11 11 C 1.50696 * 109.47270 * 154.99611 * 8 7 6 12 12 H 1.08000 * 119.99882 * 5.45784 * 11 8 7 13 13 C 1.37879 * 120.00014 * 185.45793 * 11 8 7 14 14 N 1.31518 * 120.00023 * 9.55762 * 13 11 8 15 15 Si 1.86803 * 120.00089 * 189.56080 * 13 11 8 16 16 H 1.48498 * 109.47243 * 84.99225 * 15 13 11 17 17 H 1.48501 * 109.47118 * 204.99735 * 15 13 11 18 18 H 1.48506 * 109.46833 * 324.99402 * 15 13 11 19 19 N 1.32487 * 119.68847 * 0.27966 * 6 5 4 20 20 N 1.28351 * 122.07092 * 359.39445 * 19 6 5 21 21 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46771 * 299.98850 * 1 2 3 23 23 H 1.08996 * 109.47823 * 59.99865 * 1 2 3 24 24 H 1.09005 * 109.46771 * 240.01150 * 2 1 3 25 25 H 1.08996 * 109.47823 * 120.00135 * 2 1 3 26 26 H 1.08009 * 120.97435 * 0.02562 * 4 3 2 27 27 H 1.07996 * 121.04591 * 180.02562 * 5 4 3 28 28 H 0.96998 * 119.99397 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.46936 * 183.66312 * 10 8 7 30 30 H 1.09007 * 109.46782 * 303.65561 * 10 8 7 31 31 H 1.08991 * 109.47436 * 63.66000 * 10 8 7 32 32 H 0.96995 * 119.99836 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9138 1.8453 0.9848 5 6 3.3494 3.1600 0.9465 6 6 2.8746 3.9752 -0.0808 7 7 3.2817 5.3022 -0.1643 8 6 4.2118 5.8469 0.8278 9 1 4.9216 5.0741 1.1232 10 6 3.4297 6.3172 2.0558 11 6 4.9576 7.0122 0.2306 12 1 4.6975 7.3726 -0.7537 13 6 5.9722 7.6184 0.9408 14 7 6.4163 7.0703 2.0508 15 14 6.7158 9.2181 0.3265 16 1 5.8939 10.3604 0.8008 17 1 8.0994 9.3534 0.8484 18 1 6.7452 9.2123 -1.1583 19 7 2.0299 3.4807 -0.9738 20 7 1.6352 2.2600 -0.9355 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.2502 1.1704 1.7581 27 1 4.0356 3.5413 1.6882 28 1 2.9503 5.8670 -0.8799 29 1 4.1136 6.7815 2.7663 30 1 2.6756 7.0427 1.7504 31 1 2.9426 5.4628 2.5256 32 1 7.1298 7.4970 2.5505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260477932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:51 Heat of formation + Delta-G solvation = 25.012300 kcal Electronic energy + Delta-G solvation = -14558.673470 eV Core-core repulsion = 12132.416065 eV Total energy + Delta-G solvation = -2426.257405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.81059 -38.12287 -35.61196 -34.60149 -33.22282 -31.64825 -29.37585 -27.32460 -25.99583 -24.66782 -23.15332 -21.91142 -19.47199 -18.11363 -17.81927 -16.84011 -16.49056 -16.04833 -15.44242 -15.01646 -14.85256 -14.31830 -14.19097 -14.02917 -13.34872 -13.09655 -12.92862 -12.74081 -12.64623 -12.44914 -12.20426 -11.97326 -11.66272 -11.42878 -11.19120 -10.92838 -10.57515 -10.35119 -8.72448 -8.26192 -6.36849 0.03267 0.40520 1.42240 1.44076 1.52496 2.25829 2.48239 2.80597 3.06874 3.51870 3.79632 3.90069 3.96786 4.25458 4.46658 4.56277 4.61516 4.74491 4.86716 4.95143 4.96657 5.08499 5.12563 5.24146 5.34018 5.43859 5.53390 5.59222 5.69663 5.97164 6.31060 6.67942 6.92188 7.32634 8.04864 8.81933 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.068111 B = 0.005745 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.993870 B = 4872.376906 C = 5028.777266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.005 4.005 4 C -0.066 4.066 5 C -0.194 4.194 6 C 0.331 3.669 7 N -0.696 5.696 8 C 0.276 3.724 9 H 0.027 0.973 10 C -0.135 4.135 11 C -0.553 4.553 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.909 5.909 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.356 5.356 20 N -0.232 5.232 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.185 0.815 27 H 0.145 0.855 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -10.993 0.915 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C -0.158 4.158 4 C -0.094 4.094 5 C -0.227 4.227 6 C 0.088 3.912 7 N -0.325 5.325 8 C 0.173 3.827 9 H 0.045 0.955 10 C -0.194 4.194 11 C -0.592 4.592 12 H 0.078 0.922 13 C -0.173 4.173 14 N -0.547 5.547 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.208 5.208 20 N -0.072 5.072 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.202 0.798 27 H 0.162 0.838 28 H 0.233 0.767 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.662 -10.572 -0.136 12.496 hybrid contribution 1.345 1.234 0.766 1.979 sum -5.316 -9.338 0.630 10.764 Atomic orbital electron populations 1.21681 0.94319 1.02630 1.01390 1.20393 0.96711 0.87473 1.04621 1.23075 0.98852 0.99759 0.94069 1.22489 0.93636 0.94789 0.98479 1.22124 1.04364 0.95555 1.00696 1.20457 0.90983 0.88081 0.91710 1.45146 1.48552 1.06571 1.32238 1.18587 0.85750 0.93172 0.85215 0.95485 1.21973 0.99093 0.99159 0.99201 1.21416 1.18458 1.15850 1.03437 0.92177 1.25573 0.96079 1.00431 0.95248 1.70024 1.27909 1.39528 1.17222 0.85525 0.77503 0.79764 0.78590 1.19750 1.20718 1.19662 1.72877 1.15672 1.07706 1.24530 1.72411 1.17670 0.96672 1.20456 0.89935 0.93528 0.93717 0.89699 0.87460 0.79791 0.83763 0.76713 0.92400 0.94488 0.94920 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.78 71.98 0.70 -2.01 16 2 C -0.05 -1.03 6.35 29.85 0.19 -0.84 16 3 C -0.01 -0.16 6.26 42.71 0.27 0.11 16 4 C -0.07 -1.84 9.81 22.49 0.22 -1.62 16 5 C -0.19 -6.96 8.96 22.65 0.20 -6.75 16 6 C 0.33 13.68 7.73 133.10 1.03 14.71 16 7 N -0.70 -30.40 5.24 -327.70 -1.72 -32.12 16 8 C 0.28 13.20 2.12 44.25 0.09 13.30 16 9 H 0.03 1.41 6.44 -2.39 -0.02 1.40 16 10 C -0.14 -6.09 9.32 71.98 0.67 -5.42 16 11 C -0.55 -28.79 8.66 25.60 0.22 -28.57 16 12 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 13 C 0.03 1.46 5.17 84.65 0.44 1.90 16 14 N -0.91 -48.85 12.16 21.45 0.26 -48.59 16 15 Si 0.96 41.33 29.55 68.60 2.03 43.36 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 N -0.36 -14.87 11.54 -55.10 -0.64 -15.51 16 20 N -0.23 -8.62 11.05 -47.57 -0.53 -9.14 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.04 1.03 7.96 -2.39 -0.02 1.01 16 24 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.11 1.40 7.92 -2.39 -0.02 1.38 16 26 H 0.18 3.37 8.00 -2.91 -0.02 3.35 16 27 H 0.14 5.27 6.20 -2.91 -0.02 5.25 16 28 H 0.40 17.04 8.65 -92.71 -0.80 16.23 16 29 H 0.06 2.81 6.83 -2.39 -0.02 2.80 16 30 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 32 H 0.27 13.68 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -59.87 273.31 3.77 -56.11 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.32 Total: 21.09 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.04 Total: -15.20 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -2.62 Total: -105.36 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -59.87 3.77 -56.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260477932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.120 kcal (2) G-P(sol) polarization free energy of solvation -59.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds