Wall clock time and date at job start Mon Mar 30 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.90382 * 2 1 4 4 C 1.39870 * 126.04035 * 144.56983 * 3 2 1 5 5 N 1.30834 * 108.20429 * 180.02562 * 4 3 2 6 6 N 1.40082 * 108.20418 * 0.02562 * 5 4 3 7 7 H 0.97004 * 126.03456 * 179.97438 * 6 5 4 8 8 C 1.34940 * 107.92778 * 359.97438 * 6 5 4 9 9 N 1.47900 * 109.91436 * 121.09995 * 2 1 3 10 10 C 1.48530 * 105.82267 * 94.22437 * 9 2 1 11 11 C 1.54943 * 103.22648 * 39.20091 * 10 9 2 12 12 C 1.53989 * 109.91972 * 238.89703 * 2 1 3 13 13 H 1.09005 * 110.30866 * 0.58832 * 12 2 1 14 14 C 1.50694 * 110.30892 * 122.75771 * 12 2 1 15 15 H 1.07999 * 120.00228 * 64.94695 * 14 12 2 16 16 C 1.37876 * 120.00186 * 244.94607 * 14 12 2 17 17 N 1.31512 * 120.00252 * 184.76819 * 16 14 12 18 18 Si 1.86803 * 119.99700 * 4.76770 * 16 14 12 19 19 H 1.48502 * 109.47031 * 84.56336 * 18 16 14 20 20 H 1.48504 * 109.47127 * 204.55721 * 18 16 14 21 21 H 1.48499 * 109.47440 * 324.56270 * 18 16 14 22 22 H 1.09003 * 109.46631 * 60.70241 * 1 2 3 23 23 H 1.09000 * 109.46742 * 180.70222 * 1 2 3 24 24 H 1.08994 * 109.47511 * 300.70206 * 1 2 3 25 25 H 1.08002 * 125.89597 * 359.97438 * 4 3 2 26 26 H 1.08002 * 126.12891 * 179.97438 * 8 6 5 27 27 H 1.00901 * 111.00099 * 333.70796 * 9 2 1 28 28 H 1.08994 * 110.67192 * 157.63929 * 10 9 2 29 29 H 1.08999 * 110.66448 * 280.77497 * 10 9 2 30 30 H 1.09000 * 110.71790 * 80.94274 * 11 10 9 31 31 H 1.08994 * 110.72606 * 204.05170 * 11 10 9 32 32 H 0.97003 * 120.00067 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 3.1898 1.8770 0.6556 5 7 3.3065 3.1594 0.4238 6 7 2.2358 3.5566 -0.3875 7 1 2.0703 4.4547 -0.7146 8 6 1.4754 2.4693 -0.6335 9 7 2.0339 -0.7183 1.1907 10 6 2.2708 -2.1167 0.7499 11 6 2.8602 -1.9450 -0.6727 12 6 2.0547 -0.7479 -1.2396 13 1 1.2226 -1.1026 -1.8478 14 6 2.9519 0.1503 -2.0516 15 1 3.8867 0.4975 -1.6368 16 6 2.5794 0.5289 -3.3239 17 7 3.4029 1.2347 -4.0676 18 14 0.9048 0.0392 -3.9914 19 1 -0.1134 1.0233 -3.5441 20 1 0.9512 0.0150 -5.4755 21 1 0.5452 -1.3097 -3.4852 22 1 -0.3633 0.5029 -0.8963 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3634 0.5247 0.8836 25 1 3.8623 1.2774 1.2512 26 1 0.5746 2.4437 -1.2288 27 1 1.3630 -0.6852 1.9437 28 1 2.9872 -2.6109 1.4061 29 1 1.3338 -2.6725 0.7135 30 1 3.9231 -1.7082 -0.6237 31 1 2.6933 -2.8412 -1.2702 32 1 3.1407 1.5014 -4.9626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260551065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:28 Heat of formation + Delta-G solvation = 81.778389 kcal Electronic energy + Delta-G solvation = -15889.149874 eV Core-core repulsion = 13465.354031 eV Total energy + Delta-G solvation = -2423.795843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33559 -37.95343 -32.60920 -31.45183 -30.38286 -29.76878 -27.68705 -25.95405 -23.38084 -20.94250 -20.63849 -19.81657 -18.14140 -17.15357 -16.66018 -15.24793 -14.46105 -13.83575 -13.57602 -13.48128 -12.79127 -12.65332 -12.35627 -12.26335 -12.09142 -11.61070 -11.22874 -10.94871 -10.76285 -10.67795 -10.24504 -9.71349 -9.65577 -9.47858 -8.91179 -8.59549 -8.42907 -7.86772 -7.27416 -5.99335 -3.91964 2.92527 3.21557 3.31467 3.34211 3.84165 3.94518 4.42538 4.90207 5.22511 5.67061 5.71569 5.77092 5.84174 5.89844 6.00094 6.03443 6.18125 6.33870 6.48195 6.59884 6.67528 6.80973 6.92682 7.02709 7.17088 7.24377 7.67482 7.71926 7.84560 8.05064 8.21638 8.65004 8.68023 9.11184 9.63408 11.14360 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.017622 C = 0.012483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.395794 B = 1588.516356 C = 2242.485474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.165 3.835 3 C -0.141 4.141 4 C 0.078 3.922 5 N -0.320 5.320 6 N -0.486 5.486 7 H 0.427 0.573 8 C 0.053 3.947 9 N -0.659 5.659 10 C 0.037 3.963 11 C -0.115 4.115 12 C 0.008 3.992 13 H 0.044 0.956 14 C -0.470 4.470 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.864 3.136 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.266 1.266 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.322 0.678 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 -1.923 7.563 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 C -0.153 4.153 4 C -0.108 4.108 5 N -0.143 5.143 6 N -0.194 5.194 7 H 0.269 0.731 8 C -0.093 4.093 9 N -0.287 5.287 10 C -0.092 4.092 11 C -0.153 4.153 12 C -0.012 4.012 13 H 0.062 0.938 14 C -0.509 4.509 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.693 3.307 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.191 1.191 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.190 0.810 26 H 0.171 0.829 27 H 0.137 0.863 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.307 -0.587 7.563 9.258 hybrid contribution -2.496 -0.868 -1.168 2.889 sum -7.803 -1.454 6.395 10.193 Atomic orbital electron populations 1.22488 0.97848 1.00690 1.01492 1.20353 0.90046 0.90661 0.91708 1.19186 0.98035 0.93825 1.04236 1.23420 0.97056 0.91133 0.99191 1.77099 1.07822 1.15218 1.14175 1.45912 1.21041 1.09704 1.42759 0.73135 1.21847 0.98471 0.87778 1.01214 1.62959 1.47393 1.10472 1.07836 1.22991 0.98292 0.89974 0.97979 1.22704 1.01222 0.98474 0.92905 1.20350 0.95709 0.92779 0.92379 0.93772 1.20835 1.05542 1.26806 0.97679 0.90548 1.25021 0.96010 0.95233 0.96774 1.69908 1.35400 1.39041 1.09679 0.87104 0.86181 0.79445 0.77973 1.20456 1.21905 1.19143 0.92458 0.93408 0.93200 0.80967 0.82892 0.86293 0.91464 0.95539 0.91103 0.93199 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 7.82 37.16 0.29 -2.51 16 2 C 0.16 3.17 1.09 -131.68 -0.14 3.03 16 3 C -0.14 -2.91 3.14 -105.05 -0.33 -3.24 16 4 C 0.08 1.65 11.03 -17.37 -0.19 1.46 16 5 N -0.32 -6.79 12.70 30.62 0.39 -6.40 16 6 N -0.49 -9.33 7.36 30.44 0.22 -9.11 16 7 H 0.43 6.69 8.96 -182.61 -1.64 5.05 16 8 C 0.05 1.06 10.79 -17.23 -0.19 0.88 16 9 N -0.66 -11.25 6.55 -97.63 -0.64 -11.89 16 10 C 0.04 0.60 7.54 -1.90 -0.01 0.59 16 11 C -0.11 -2.27 6.61 -24.63 -0.16 -2.43 16 12 C 0.01 0.17 2.49 -90.19 -0.22 -0.06 16 13 H 0.04 1.01 4.14 -51.93 -0.21 0.79 16 14 C -0.47 -12.48 6.55 -34.44 -0.23 -12.71 16 15 H 0.08 2.32 7.60 -52.49 -0.40 1.92 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 18 Si 0.86 20.66 27.42 -169.99 -4.66 16.00 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.11 6.18 56.52 0.35 -5.76 16 22 H 0.06 1.00 7.36 -51.93 -0.38 0.62 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.17 3.41 8.04 -52.49 -0.42 2.99 16 26 H 0.15 2.83 7.43 -52.49 -0.39 2.44 16 27 H 0.32 4.78 8.43 -39.29 -0.33 4.45 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.50 7.87 -51.93 -0.41 1.09 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 259.75 15.07 3.91 3.91 Total: -1.00 -30.46 259.75 -6.77 -37.23 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.49 Total: 9.64 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.29 Total: -13.15 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.75 Total: -53.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.66 Total: 16.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.46 -6.77 -37.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.009 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds