Wall clock time and date at job start Mon Mar 30 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.90382 * 2 1 4 4 C 1.39870 * 126.04035 * 144.56983 * 3 2 1 5 5 N 1.30834 * 108.20429 * 180.02562 * 4 3 2 6 6 N 1.40082 * 108.20418 * 0.02562 * 5 4 3 7 7 H 0.97004 * 126.03456 * 179.97438 * 6 5 4 8 8 C 1.34940 * 107.92778 * 359.97438 * 6 5 4 9 9 N 1.47900 * 109.91436 * 121.09995 * 2 1 3 10 10 C 1.48530 * 105.82267 * 94.22437 * 9 2 1 11 11 C 1.54943 * 103.22648 * 39.20091 * 10 9 2 12 12 C 1.53989 * 109.91972 * 238.89703 * 2 1 3 13 13 H 1.09005 * 110.30866 * 0.58832 * 12 2 1 14 14 C 1.50694 * 110.30892 * 122.75771 * 12 2 1 15 15 H 1.07999 * 120.00228 * 64.94695 * 14 12 2 16 16 C 1.37876 * 120.00186 * 244.94607 * 14 12 2 17 17 N 1.31512 * 120.00252 * 184.76819 * 16 14 12 18 18 Si 1.86803 * 119.99700 * 4.76770 * 16 14 12 19 19 H 1.48502 * 109.47031 * 84.56336 * 18 16 14 20 20 H 1.48504 * 109.47127 * 204.55721 * 18 16 14 21 21 H 1.48499 * 109.47440 * 324.56270 * 18 16 14 22 22 H 1.09003 * 109.46631 * 60.70241 * 1 2 3 23 23 H 1.09000 * 109.46742 * 180.70222 * 1 2 3 24 24 H 1.08994 * 109.47511 * 300.70206 * 1 2 3 25 25 H 1.08002 * 125.89597 * 359.97438 * 4 3 2 26 26 H 1.08002 * 126.12891 * 179.97438 * 8 6 5 27 27 H 1.00901 * 111.00099 * 333.70796 * 9 2 1 28 28 H 1.08994 * 110.67192 * 157.63929 * 10 9 2 29 29 H 1.08999 * 110.66448 * 280.77497 * 10 9 2 30 30 H 1.09000 * 110.71790 * 80.94274 * 11 10 9 31 31 H 1.08994 * 110.72606 * 204.05170 * 11 10 9 32 32 H 0.97003 * 120.00067 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 3.1898 1.8770 0.6556 5 7 3.3065 3.1594 0.4238 6 7 2.2358 3.5566 -0.3875 7 1 2.0703 4.4547 -0.7146 8 6 1.4754 2.4693 -0.6335 9 7 2.0339 -0.7183 1.1907 10 6 2.2708 -2.1167 0.7499 11 6 2.8602 -1.9450 -0.6727 12 6 2.0547 -0.7479 -1.2396 13 1 1.2226 -1.1026 -1.8478 14 6 2.9519 0.1503 -2.0516 15 1 3.8867 0.4975 -1.6368 16 6 2.5794 0.5289 -3.3239 17 7 3.4029 1.2347 -4.0676 18 14 0.9048 0.0392 -3.9914 19 1 -0.1134 1.0233 -3.5441 20 1 0.9512 0.0150 -5.4755 21 1 0.5452 -1.3097 -3.4852 22 1 -0.3633 0.5029 -0.8963 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3634 0.5247 0.8836 25 1 3.8623 1.2774 1.2512 26 1 0.5746 2.4437 -1.2288 27 1 1.3630 -0.6852 1.9437 28 1 2.9872 -2.6109 1.4061 29 1 1.3338 -2.6725 0.7135 30 1 3.9231 -1.7082 -0.6237 31 1 2.6933 -2.8412 -1.2702 32 1 3.1407 1.5014 -4.9626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260551065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:28 Heat of formation + Delta-G solvation = 59.036220 kcal Electronic energy + Delta-G solvation = -15890.136048 eV Core-core repulsion = 13465.354031 eV Total energy + Delta-G solvation = -2424.782017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90824 -39.46899 -34.61765 -32.91620 -31.97436 -31.50125 -29.18841 -27.57990 -25.09702 -22.55776 -22.13826 -21.42359 -19.75893 -19.04030 -18.34697 -16.68159 -16.24437 -15.41129 -15.18080 -15.07061 -14.62516 -14.28608 -13.97350 -13.65951 -13.62906 -13.07615 -12.82679 -12.56408 -12.35543 -12.21105 -11.84046 -11.68715 -11.32419 -11.18033 -10.78149 -10.49407 -10.18255 -9.18020 -8.86785 -8.11041 -6.06680 1.31985 1.34737 1.39948 1.47028 2.30775 2.38677 2.43282 3.21706 3.53747 4.19573 4.28233 4.32400 4.37945 4.47694 4.56468 4.69886 4.80849 4.91773 4.99980 5.08352 5.18718 5.33300 5.38079 5.46995 5.54392 5.62720 5.84986 6.11282 6.23727 6.56180 6.74942 6.82807 6.95612 7.08688 7.51704 9.06537 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020900 B = 0.017622 C = 0.012483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.395794 B = 1588.516356 C = 2242.485474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 C -0.157 4.157 4 C 0.064 3.936 5 N -0.342 5.342 6 N -0.480 5.480 7 H 0.441 0.559 8 C 0.048 3.952 9 N -0.665 5.665 10 C 0.048 3.952 11 C -0.119 4.119 12 C -0.001 4.001 13 H 0.046 0.954 14 C -0.452 4.452 15 H 0.023 0.977 16 C 0.012 3.988 17 N -0.958 5.958 18 Si 0.923 3.077 19 H -0.256 1.256 20 H -0.304 1.304 21 H -0.245 1.245 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.176 0.824 26 H 0.171 0.829 27 H 0.340 0.660 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.272 -3.203 8.715 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.076 3.924 3 C -0.168 4.168 4 C -0.121 4.121 5 N -0.166 5.166 6 N -0.190 5.190 7 H 0.285 0.715 8 C -0.099 4.099 9 N -0.294 5.294 10 C -0.080 4.080 11 C -0.157 4.157 12 C -0.020 4.020 13 H 0.064 0.936 14 C -0.491 4.491 15 H 0.042 0.958 16 C -0.183 4.183 17 N -0.600 5.600 18 Si 0.749 3.251 19 H -0.181 1.181 20 H -0.231 1.231 21 H -0.170 1.170 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.193 0.807 26 H 0.188 0.812 27 H 0.157 0.843 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.869 -1.872 8.760 11.923 hybrid contribution -1.580 -0.459 -1.485 2.216 sum -9.449 -2.331 7.275 12.151 Atomic orbital electron populations 1.22434 0.95357 1.02106 1.02243 1.20116 0.91876 0.89454 0.90958 1.19510 0.97979 0.94983 1.04358 1.23597 0.97584 0.91283 0.99676 1.77030 1.08839 1.15640 1.15124 1.45970 1.20343 1.10521 1.42131 0.71529 1.22196 0.98951 0.87803 1.00978 1.62865 1.48178 1.10821 1.07551 1.22953 0.99628 0.89868 0.95600 1.22638 0.99542 0.97834 0.95730 1.20379 0.95196 0.93124 0.93323 0.93644 1.20864 1.04029 1.26340 0.97825 0.95835 1.25756 0.99843 0.95540 0.97125 1.70096 1.37962 1.41815 1.10141 0.86138 0.81893 0.80620 0.76485 1.18065 1.23134 1.16975 0.93118 0.91688 0.91084 0.80689 0.81200 0.84293 0.89576 0.93038 0.93761 0.92135 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 7.82 71.98 0.56 -4.21 16 2 C 0.17 6.07 1.09 2.93 0.00 6.07 16 3 C -0.16 -6.29 3.14 -20.14 -0.06 -6.35 16 4 C 0.06 2.71 11.03 85.24 0.94 3.65 16 5 N -0.34 -14.62 12.70 -57.02 -0.72 -15.34 16 6 N -0.48 -18.20 7.36 -57.59 -0.42 -18.62 16 7 H 0.44 13.54 8.96 -213.33 -1.91 11.63 16 8 C 0.05 1.85 10.79 83.54 0.90 2.75 16 9 N -0.66 -20.66 6.55 -462.78 -3.03 -23.69 16 10 C 0.05 1.40 7.54 86.65 0.65 2.06 16 11 C -0.12 -4.50 6.61 31.95 0.21 -4.29 16 12 C 0.00 -0.02 2.49 -10.51 -0.03 -0.05 16 13 H 0.05 1.93 4.14 -2.38 -0.01 1.92 16 14 C -0.45 -24.27 6.55 25.60 0.17 -24.10 16 15 H 0.02 1.49 7.60 -2.91 -0.02 1.46 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.96 -59.17 13.96 21.45 0.30 -58.87 16 18 Si 0.92 41.72 27.42 68.60 1.88 43.60 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.25 -10.20 6.18 99.48 0.61 -9.59 16 22 H 0.05 1.55 7.36 -2.39 -0.02 1.54 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.18 7.04 8.04 -2.91 -0.02 7.01 16 26 H 0.17 5.89 7.43 -2.91 -0.02 5.87 16 27 H 0.34 8.70 8.43 -89.69 -0.76 7.94 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.88 7.87 -2.39 -0.02 1.86 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.93 259.75 0.19 -66.74 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -1.62 Total: 29.53 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 3.81 Total: -23.35 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -3.88 Total: -116.52 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Total: -66.93 0.19 -66.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260551065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.772 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds