Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.38405 * 119.99523 * 155.00324 * 4 2 1 6 6 N 1.32495 * 119.21923 * 359.72624 * 5 4 2 7 7 C 1.32284 * 120.73551 * 179.71488 * 6 5 4 8 8 C 1.38600 * 119.19859 * 0.55431 * 7 6 5 9 9 C 1.50706 * 120.71890 * 179.70216 * 8 7 6 10 10 C 1.50694 * 109.46897 * 270.02216 * 9 8 7 11 11 H 1.07995 * 120.00909 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99781 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99823 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00280 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46969 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47595 * 119.99514 * 14 12 10 17 17 H 1.48501 * 109.47108 * 239.99877 * 14 12 10 18 18 C 1.38605 * 118.55787 * 359.72626 * 8 7 6 19 19 N 1.32274 * 119.19841 * 359.97438 * 18 8 7 20 20 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 21 21 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 24 24 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 25 25 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 27 27 H 0.96995 * 119.99814 * 335.00063 * 4 2 1 28 28 H 1.08005 * 120.39649 * 180.25406 * 7 6 5 29 29 H 1.08994 * 109.46683 * 30.02575 * 9 8 7 30 30 H 1.09000 * 109.46617 * 150.01982 * 9 8 7 31 31 H 0.97005 * 120.00129 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.39494 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 3.2733 -1.2743 1.1944 6 7 4.0177 -1.2041 0.1006 7 6 5.2237 -1.7466 0.0676 8 6 5.7005 -2.4036 1.1910 9 6 7.0667 -3.0398 1.1888 10 6 6.9555 -4.4668 0.7174 11 1 5.9922 -4.8725 0.4460 12 6 8.0839 -5.2546 0.6325 13 7 9.2572 -4.7605 0.9624 14 14 7.9464 -7.0232 0.0475 15 1 6.5272 -7.3337 -0.2606 16 1 8.7700 -7.2060 -1.1746 17 1 8.4323 -7.9363 1.1130 18 6 4.8934 -2.4633 2.3162 19 7 3.6996 -1.8945 2.2849 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6766 1.9563 0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.4622 -0.7385 1.9895 28 1 5.8275 -1.6825 -0.8256 29 1 7.7243 -2.4859 0.5189 30 1 7.4775 -3.0215 2.1983 31 1 10.0511 -5.3147 0.9024 32 1 5.2352 -2.9681 3.2077 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = 19.858974 kcal Electronic energy + Delta-G solvation = -14401.351604 eV Core-core repulsion = 11974.870734 eV Total energy + Delta-G solvation = -2426.480870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78327 -38.10687 -35.66215 -34.46139 -33.77092 -31.67514 -28.49686 -28.00917 -25.50645 -25.31115 -22.86251 -21.82049 -19.15694 -18.48861 -18.29204 -16.69081 -16.22440 -15.88477 -15.69512 -15.06188 -14.83455 -14.36314 -14.21635 -13.86861 -13.38123 -13.15400 -13.02814 -12.94863 -12.60805 -12.36133 -12.30650 -11.89573 -11.68664 -11.59100 -11.31698 -10.86018 -10.60615 -9.94940 -8.82680 -8.15790 -6.29856 0.28137 0.43943 1.41188 1.43119 1.54906 2.02283 2.42283 3.07510 3.13983 3.36131 3.89728 4.00777 4.06428 4.22563 4.34848 4.42819 4.49677 4.78299 4.85390 4.96364 5.05099 5.08323 5.26616 5.37152 5.39490 5.53979 5.66378 5.75976 6.00498 6.19080 6.29495 6.58803 6.82153 7.38913 7.47176 8.91428 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052174 B = 0.005605 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.536212 B = 4993.930664 C = 5100.738964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 C -0.156 4.156 4 N -0.695 5.695 5 C 0.527 3.473 6 N -0.571 5.571 7 C 0.177 3.823 8 C -0.214 4.214 9 C 0.077 3.923 10 C -0.528 4.528 11 H 0.049 0.951 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.178 3.822 19 N -0.581 5.581 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.414 0.586 28 H 0.172 0.828 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.266 0.734 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 9.029 -1.428 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.046 3.954 3 C -0.214 4.214 4 N -0.334 5.334 5 C 0.170 3.830 6 N -0.293 5.293 7 C 0.011 3.989 8 C -0.221 4.221 9 C 0.039 3.961 10 C -0.566 4.566 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.785 3.215 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.203 1.203 18 C 0.012 3.988 19 N -0.303 5.303 20 H 0.091 0.909 21 H 0.109 0.891 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.252 0.748 28 H 0.190 0.810 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.656 9.509 -1.597 18.386 hybrid contribution 1.214 -1.419 0.146 1.873 sum -14.442 8.090 -1.451 16.617 Atomic orbital electron populations 1.22024 0.91829 1.02817 1.04166 1.20997 0.95176 0.92388 0.86842 1.22148 1.00439 0.95966 1.02884 1.44216 1.12328 1.59029 1.17873 1.19669 0.88639 0.89259 0.85457 1.67907 1.07512 1.26160 1.27730 1.22985 0.89882 0.88463 0.97565 1.21748 1.01358 1.02619 0.96400 1.17801 0.87628 0.93933 0.96729 1.21390 0.93450 0.97191 1.44537 0.93289 1.25796 0.94918 1.02678 0.95381 1.70061 0.99105 1.38181 1.49227 0.85478 0.78200 0.79691 0.78145 1.19482 1.20218 1.20252 1.22953 0.87041 0.90816 0.98015 1.67879 1.17643 1.16340 1.28467 0.90930 0.89137 0.92395 0.91213 0.92052 0.94845 0.89882 0.74773 0.81046 0.96859 0.96893 0.92549 0.81037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.38 71.98 0.68 -1.47 16 2 C 0.15 3.27 3.18 44.99 0.14 3.41 16 3 C -0.16 -3.13 9.50 71.98 0.68 -2.45 16 4 N -0.69 -18.73 5.22 -330.41 -1.73 -20.45 16 5 C 0.53 18.85 8.40 261.49 2.20 21.05 16 6 N -0.57 -21.37 9.20 -197.98 -1.82 -23.19 16 7 C 0.18 7.05 11.00 84.71 0.93 7.99 16 8 C -0.21 -9.27 5.10 -19.69 -0.10 -9.37 16 9 C 0.08 3.92 5.15 29.10 0.15 4.07 16 10 C -0.53 -29.08 9.09 25.60 0.23 -28.85 16 11 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 12 C 0.01 0.61 5.46 84.66 0.46 1.07 16 13 N -0.93 -53.96 13.29 21.45 0.28 -53.68 16 14 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.18 7.13 11.00 84.71 0.93 8.06 16 19 N -0.58 -22.06 10.46 -197.98 -2.07 -24.13 16 20 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 1.81 7.50 -2.39 -0.02 1.79 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.41 9.62 8.72 -92.71 -0.81 8.81 16 28 H 0.17 6.27 8.06 -2.91 -0.02 6.25 16 29 H 0.01 0.70 8.10 -2.39 -0.02 0.68 16 30 H 0.01 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.17 6.31 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -63.24 279.73 3.30 -59.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.30 Total: 12.46 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.31 Total: 3.51 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -5.33 Total: -121.45 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -63.24 3.30 -59.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.802 kcal (2) G-P(sol) polarization free energy of solvation -63.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds