Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47083 * 2 1 4 4 N 1.32294 * 120.39973 * 270.25228 * 3 2 1 5 5 C 1.32478 * 120.73943 * 180.30862 * 4 3 2 6 6 N 1.38405 * 119.21913 * 179.73114 * 5 4 3 7 7 C 1.46502 * 120.00590 * 179.97438 * 6 5 4 8 8 N 1.32514 * 121.56853 * 359.71657 * 5 4 3 9 9 C 1.32264 * 120.73581 * 359.97438 * 8 5 4 10 10 C 1.38583 * 120.40254 * 89.99991 * 3 2 1 11 11 C 1.50699 * 120.72014 * 359.97048 * 10 3 2 12 12 C 1.50706 * 109.46817 * 84.72515 * 11 10 3 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 H 1.08998 * 109.47588 * 300.00200 * 1 2 3 21 21 H 1.09001 * 109.47199 * 60.00049 * 1 2 3 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47255 * 239.99550 * 2 1 3 24 24 H 1.09001 * 109.47199 * 119.99951 * 2 1 3 25 25 H 0.97004 * 119.99810 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47164 * 300.00513 * 7 6 5 27 27 H 1.09002 * 109.46549 * 59.99830 * 7 6 5 28 28 H 1.08995 * 109.47516 * 180.02562 * 7 6 5 29 29 H 1.08000 * 120.39974 * 179.97438 * 9 8 5 30 30 H 1.09000 * 109.47247 * 324.72578 * 11 10 3 31 31 H 1.09001 * 109.47358 * 204.72004 * 11 10 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2507 2.0536 -1.1410 5 6 2.6980 3.3006 -1.1489 6 7 2.9209 3.9307 -2.3609 7 6 3.4149 5.3096 -2.3897 8 7 2.9368 3.9590 -0.0241 9 6 2.7335 3.3863 1.1507 10 6 2.2660 2.0820 1.1953 11 6 2.0228 1.3961 2.5149 12 6 3.2373 0.5874 2.8920 13 1 4.0973 0.5682 2.2390 14 6 3.2484 -0.1320 4.0681 15 7 2.1990 -0.1130 4.8606 16 14 4.7541 -1.1338 4.5359 17 1 5.7912 -0.9897 3.4831 18 1 5.2914 -0.6445 5.8310 19 1 4.3763 -2.5642 4.6654 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.7500 3.4593 -3.1913 26 1 2.7041 5.9610 -1.8811 27 1 4.3797 5.3605 -1.8851 28 1 3.5280 5.6335 -3.4243 29 1 2.9304 3.9279 2.0641 30 1 1.1596 0.7362 2.4277 31 1 1.8317 2.1447 3.2838 32 1 2.2068 -0.6194 5.6878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = 35.369750 kcal Electronic energy + Delta-G solvation = -14807.742821 eV Core-core repulsion = 12381.934548 eV Total energy + Delta-G solvation = -2425.808273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35370 -36.09822 -34.01814 -33.41851 -31.83323 -30.40706 -27.48091 -25.64314 -24.34177 -23.35761 -21.47096 -20.35676 -17.85838 -16.57281 -16.37264 -14.81886 -14.75833 -14.63339 -13.93774 -13.48950 -13.33028 -13.09254 -12.76432 -12.24990 -12.09851 -11.88036 -11.42031 -11.15581 -11.00210 -10.67732 -10.51190 -10.37414 -10.02404 -9.68262 -9.44007 -9.17016 -8.55254 -8.29610 -7.31339 -6.07267 -4.11871 1.85051 2.02254 3.27211 3.34192 3.35672 3.40580 4.38962 4.61450 4.78889 5.21711 5.26395 5.30674 5.46696 5.68187 5.78106 5.83967 5.91232 5.93287 6.13916 6.27378 6.37713 6.53546 6.68243 6.84051 7.03998 7.37807 7.53058 7.58057 7.68870 7.87647 8.02600 8.28114 8.93413 8.97056 9.52631 11.01488 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.007871 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.635884 B = 3556.297955 C = 3960.217573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C 0.209 3.791 4 N -0.572 5.572 5 C 0.531 3.469 6 N -0.718 5.718 7 C 0.115 3.885 8 N -0.573 5.573 9 C 0.170 3.830 10 C -0.187 4.187 11 C 0.064 3.936 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.408 0.592 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.161 0.839 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 4.903 -10.523 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C 0.063 3.937 4 N -0.294 5.294 5 C 0.174 3.826 6 N -0.358 5.358 7 C -0.030 4.030 8 N -0.295 5.295 9 C 0.005 3.995 10 C -0.193 4.193 11 C 0.026 3.974 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.126 0.874 25 H 0.243 0.757 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.179 0.821 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.675 5.498 -11.191 12.487 hybrid contribution 0.718 -1.039 0.824 1.508 sum 0.043 4.459 -10.367 11.285 Atomic orbital electron populations 1.21630 0.94607 1.01633 1.01702 1.20561 0.96021 0.90507 1.04388 1.21213 0.90107 0.95663 0.86752 1.67552 1.20990 1.09103 1.31800 1.19155 0.90889 0.85980 0.86550 1.43561 1.73918 1.14669 1.03689 1.21312 0.99274 0.81576 1.00827 1.67775 1.24520 1.39113 0.98129 1.22816 0.90459 0.92076 0.94171 1.21925 1.02053 0.95925 0.99411 1.18140 0.97705 0.95114 0.86412 1.21079 1.00498 1.28239 1.05200 0.92707 1.24976 0.96119 0.96637 0.96298 1.69954 1.28876 1.41801 1.12373 0.86539 0.83118 0.79960 0.78481 1.19764 1.20924 1.20885 0.92169 0.93352 0.92269 0.91089 0.87365 0.75689 0.92937 0.92890 0.91500 0.82136 0.94610 0.95351 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.80 37.15 0.36 -1.87 16 2 C -0.08 -1.42 5.60 -27.89 -0.16 -1.58 16 3 C 0.21 4.33 6.08 -82.27 -0.50 3.83 16 4 N -0.57 -11.44 10.40 -10.16 -0.11 -11.55 16 5 C 0.53 10.15 8.43 -322.80 -2.72 7.43 16 6 N -0.72 -10.60 5.86 -69.11 -0.41 -11.00 16 7 C 0.12 1.35 10.68 59.85 0.64 1.98 16 8 N -0.57 -11.35 9.59 -13.93 -0.13 -11.48 16 9 C 0.17 3.47 10.98 -17.22 -0.19 3.28 16 10 C -0.19 -4.08 5.10 -104.35 -0.53 -4.61 16 11 C 0.06 1.57 4.46 -29.03 -0.13 1.44 16 12 C -0.51 -13.71 8.39 -34.44 -0.29 -13.99 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.11 2.22 6.32 -51.93 -0.33 1.90 16 25 H 0.41 5.16 8.94 -40.82 -0.37 4.79 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.16 2.98 8.06 -52.49 -0.42 2.55 16 30 H 0.04 0.90 6.28 -51.93 -0.33 0.57 16 31 H 0.03 0.72 8.07 -51.93 -0.42 0.31 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 274.91 15.07 4.14 4.14 Total: -1.00 -30.02 274.91 -8.72 -38.73 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.32 Total: 2.21 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.61 Total: -2.50 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.09 Total: -58.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.02 -8.72 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.104 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds