Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47083 * 2 1 4 4 N 1.32294 * 120.39973 * 270.25228 * 3 2 1 5 5 C 1.32478 * 120.73943 * 180.30862 * 4 3 2 6 6 N 1.38405 * 119.21913 * 179.73114 * 5 4 3 7 7 C 1.46502 * 120.00590 * 179.97438 * 6 5 4 8 8 N 1.32514 * 121.56853 * 359.71657 * 5 4 3 9 9 C 1.32264 * 120.73581 * 359.97438 * 8 5 4 10 10 C 1.38583 * 120.40254 * 89.99991 * 3 2 1 11 11 C 1.50699 * 120.72014 * 359.97048 * 10 3 2 12 12 C 1.50706 * 109.46817 * 84.72515 * 11 10 3 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 H 1.08998 * 109.47588 * 300.00200 * 1 2 3 21 21 H 1.09001 * 109.47199 * 60.00049 * 1 2 3 22 22 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47255 * 239.99550 * 2 1 3 24 24 H 1.09001 * 109.47199 * 119.99951 * 2 1 3 25 25 H 0.97004 * 119.99810 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47164 * 300.00513 * 7 6 5 27 27 H 1.09002 * 109.46549 * 59.99830 * 7 6 5 28 28 H 1.08995 * 109.47516 * 180.02562 * 7 6 5 29 29 H 1.08000 * 120.39974 * 179.97438 * 9 8 5 30 30 H 1.09000 * 109.47247 * 324.72578 * 11 10 3 31 31 H 1.09001 * 109.47358 * 204.72004 * 11 10 3 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2507 2.0536 -1.1410 5 6 2.6980 3.3006 -1.1489 6 7 2.9209 3.9307 -2.3609 7 6 3.4149 5.3096 -2.3897 8 7 2.9368 3.9590 -0.0241 9 6 2.7335 3.3863 1.1507 10 6 2.2660 2.0820 1.1953 11 6 2.0228 1.3961 2.5149 12 6 3.2373 0.5874 2.8920 13 1 4.0973 0.5682 2.2390 14 6 3.2484 -0.1320 4.0681 15 7 2.1990 -0.1130 4.8606 16 14 4.7541 -1.1338 4.5359 17 1 5.7912 -0.9897 3.4831 18 1 5.2914 -0.6445 5.8310 19 1 4.3763 -2.5642 4.6654 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.7500 3.4593 -3.1913 26 1 2.7041 5.9610 -1.8811 27 1 4.3797 5.3605 -1.8851 28 1 3.5280 5.6335 -3.4243 29 1 2.9304 3.9279 2.0641 30 1 1.1596 0.7362 2.4277 31 1 1.8317 2.1447 3.2838 32 1 2.2068 -0.6194 5.6878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = 18.142204 kcal Electronic energy + Delta-G solvation = -14808.489863 eV Core-core repulsion = 12381.934548 eV Total energy + Delta-G solvation = -2426.555315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89617 -37.51311 -35.47810 -35.28717 -33.49527 -32.02208 -29.10202 -27.10178 -25.79215 -25.06923 -23.15059 -21.86922 -19.29084 -18.46635 -18.03587 -16.66835 -16.24003 -15.95736 -15.36478 -14.97996 -14.87459 -14.58184 -14.21228 -14.09437 -13.36103 -13.26947 -13.03724 -12.95949 -12.62200 -12.35505 -12.31434 -11.88372 -11.69923 -11.36410 -11.25583 -10.75550 -10.58036 -9.93436 -8.81268 -8.13435 -6.26515 0.26374 0.42960 1.41039 1.43651 1.54765 2.06993 2.43188 3.03057 3.16102 3.28446 3.76115 3.97177 4.27109 4.41299 4.48211 4.51461 4.56244 4.72104 4.72600 4.96590 4.99717 5.10172 5.26202 5.33179 5.39923 5.56365 5.69995 5.78734 6.01467 6.21925 6.29162 6.59212 6.84484 7.41429 7.47993 8.93595 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.007871 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.635884 B = 3556.297955 C = 3960.217573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C 0.209 3.791 4 N -0.578 5.578 5 C 0.524 3.476 6 N -0.704 5.704 7 C 0.112 3.888 8 N -0.578 5.578 9 C 0.172 3.828 10 C -0.216 4.216 11 C 0.080 3.920 12 C -0.520 4.520 13 H 0.045 0.955 14 C 0.015 3.985 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.275 1.275 20 H 0.042 0.958 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.419 0.581 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.173 0.827 30 H 0.022 0.978 31 H 0.008 0.992 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 5.065 -12.110 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 C 0.062 3.938 4 N -0.301 5.301 5 C 0.167 3.833 6 N -0.344 5.344 7 C -0.032 4.032 8 N -0.302 5.302 9 C 0.006 3.994 10 C -0.223 4.223 11 C 0.042 3.958 12 C -0.558 4.558 13 H 0.063 0.937 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.201 1.201 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.257 0.743 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.190 0.810 30 H 0.040 0.960 31 H 0.026 0.974 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.046 5.687 -12.829 14.033 hybrid contribution 0.528 -0.998 1.203 1.650 sum 0.481 4.689 -11.626 12.546 Atomic orbital electron populations 1.21574 0.92802 1.03052 1.01311 1.20553 0.97528 0.89319 1.03861 1.21479 0.89274 0.96438 0.86652 1.67667 1.21825 1.09588 1.31036 1.19696 0.89879 0.85974 0.87792 1.43811 1.72311 1.15636 1.02644 1.21548 0.98434 0.79670 1.03596 1.67868 1.25238 1.38959 0.98092 1.22999 0.89576 0.91698 0.95103 1.21693 1.05128 0.96889 0.98624 1.17821 0.96442 0.94137 0.87425 1.21279 1.00863 1.28529 1.05150 0.93672 1.25716 0.98762 0.97656 0.96264 1.70051 1.30648 1.42752 1.12860 0.85566 0.79727 0.78690 0.78082 1.19637 1.20426 1.20099 0.93841 0.92327 0.89983 0.89436 0.89862 0.74322 0.93368 0.93647 0.87142 0.81022 0.95978 0.97411 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.80 71.98 0.71 -3.38 16 2 C -0.07 -2.74 5.60 29.84 0.17 -2.57 16 3 C 0.21 8.59 6.08 42.57 0.26 8.85 16 4 N -0.58 -22.42 10.40 -186.04 -1.93 -24.35 16 5 C 0.52 19.23 8.43 261.48 2.20 21.43 16 6 N -0.70 -18.95 5.86 -372.58 -2.18 -21.13 16 7 C 0.11 2.27 10.68 127.77 1.36 3.64 16 8 N -0.58 -22.38 9.59 -197.97 -1.90 -24.28 16 9 C 0.17 7.03 10.98 84.72 0.93 7.96 16 10 C -0.22 -9.60 5.10 -19.69 -0.10 -9.70 16 11 C 0.08 4.04 4.46 29.10 0.13 4.17 16 12 C -0.52 -28.37 8.39 25.60 0.21 -28.16 16 13 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 14 C 0.01 0.82 5.46 84.66 0.46 1.28 16 15 N -0.92 -53.10 13.29 21.45 0.28 -52.82 16 16 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 20 H 0.04 1.50 7.38 -2.39 -0.02 1.48 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 24 H 0.08 3.49 6.32 -2.39 -0.02 3.47 16 25 H 0.42 9.34 8.94 -92.71 -0.83 8.51 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.17 6.43 8.06 -2.91 -0.02 6.41 16 30 H 0.02 1.16 6.28 -2.39 -0.01 1.14 16 31 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -63.71 274.91 2.92 -60.78 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.29 Total: 13.05 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.34 Total: 3.52 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.73 Total: -122.57 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.71 2.92 -60.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.926 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds