Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39284 * 126.40600 * 2 1 4 4 C 1.41594 * 126.55406 * 0.02562 * 3 2 1 5 5 H 1.07999 * 120.00555 * 0.28410 * 4 3 2 6 6 C 1.39701 * 119.99840 * 180.28127 * 4 3 2 7 7 N 1.31028 * 119.99732 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00061 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47184 * 90.00127 * 8 6 4 10 10 H 1.48495 * 109.47226 * 210.00398 * 8 6 4 11 11 H 1.48505 * 109.47146 * 330.00011 * 8 6 4 12 12 C 1.41880 * 106.88497 * 180.23028 * 3 2 1 13 13 N 1.30323 * 108.04749 * 359.78197 * 12 3 2 14 14 N 1.34498 * 126.40701 * 179.85384 * 2 1 3 15 15 C 1.46499 * 125.67617 * 0.03461 * 14 2 1 16 16 H 1.08995 * 110.90778 * 2.12541 * 15 14 2 17 17 C 1.55398 * 111.02856 * 125.86605 * 15 14 2 18 18 C 1.54322 * 102.90031 * 153.63277 * 17 15 14 19 19 N 1.47439 * 107.36952 * 337.89642 * 18 17 15 20 20 C 1.47843 * 108.57210 * 358.92676 * 19 18 17 21 21 H 1.09005 * 109.47016 * 270.14554 * 1 2 3 22 22 H 1.09003 * 109.47259 * 30.14703 * 1 2 3 23 23 H 1.09008 * 109.47342 * 150.14808 * 1 2 3 24 24 H 0.96993 * 119.99796 * 179.97438 * 7 6 4 25 25 H 1.07997 * 125.97800 * 179.78526 * 12 3 2 26 26 H 1.09005 * 110.67856 * 35.33155 * 17 15 14 27 27 H 1.08997 * 110.84583 * 272.01479 * 17 15 14 28 28 H 1.09002 * 109.89036 * 218.40745 * 18 17 15 29 29 H 1.09003 * 109.88743 * 97.38054 * 18 17 15 30 30 H 1.00906 * 111.00400 * 121.19733 * 19 18 17 31 31 H 1.08996 * 110.37823 * 142.92442 * 20 19 18 32 32 H 1.09002 * 110.37399 * 265.26957 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3336 1.1210 0.0000 4 6 1.9187 2.4748 0.0005 5 1 0.8662 2.7171 0.0056 6 6 2.8707 3.4971 -0.0055 7 7 4.1476 3.2032 -0.0121 8 14 2.3234 5.2831 -0.0041 9 1 2.1860 5.7576 1.3963 10 1 3.3338 6.1110 -0.7104 11 1 1.0153 5.4005 -0.6972 12 6 3.6708 0.6469 -0.0055 13 7 3.6373 -0.6559 -0.0037 14 7 2.3052 -1.0825 0.0028 15 6 1.8545 -2.4764 0.0056 16 1 0.7667 -2.5336 -0.0326 17 6 2.4922 -3.2710 -1.1678 18 6 2.4917 -4.7218 -0.6419 19 7 2.4229 -4.6566 0.8294 20 6 2.4072 -3.2358 1.2376 21 1 -0.3633 0.0026 1.0277 22 1 -0.3634 0.8887 -0.5161 23 1 -0.3634 -0.8914 -0.5116 24 1 4.8086 3.9130 -0.0167 25 1 4.5609 1.2586 -0.0102 26 1 3.5102 -2.9295 -1.3556 27 1 1.8841 -3.1874 -2.0685 28 1 3.4073 -5.2277 -0.9483 29 1 1.6250 -5.2567 -1.0303 30 1 1.6082 -5.1412 1.1753 31 1 1.7507 -3.0947 2.0961 32 1 3.4165 -2.8967 1.4709 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = 48.601286 kcal Electronic energy + Delta-G solvation = -15017.027199 eV Core-core repulsion = 12591.792689 eV Total energy + Delta-G solvation = -2425.234510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39153 -39.12522 -35.39234 -33.33662 -32.38252 -30.42103 -29.24933 -27.91949 -25.85292 -23.16907 -22.24370 -21.21739 -19.92578 -18.62778 -17.74117 -17.02510 -16.60735 -15.54644 -15.12347 -14.97112 -14.49710 -14.24900 -14.00160 -13.71353 -13.47899 -13.29323 -12.90980 -12.88099 -12.49441 -12.38535 -12.31774 -12.20755 -11.82992 -11.72479 -11.10777 -10.71625 -9.77013 -9.35886 -9.02361 -8.33124 -5.96136 1.26891 1.44891 1.56059 1.58282 2.11384 2.34963 2.42196 3.25406 3.55770 3.61822 3.75036 3.85805 4.12893 4.28285 4.45078 4.46713 4.54866 4.79166 4.88067 4.90562 4.97254 5.01251 5.11435 5.24524 5.33990 5.69037 5.74665 5.75501 6.15177 6.48198 6.61353 6.79144 7.14972 7.19736 7.57636 8.67790 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059168 B = 0.007000 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.111902 B = 3999.307842 C = 4240.703650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.088 4.088 3 C -0.063 4.063 4 C -0.464 4.464 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.873 5.873 8 Si 0.987 3.013 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.261 1.261 12 C -0.003 4.003 13 N -0.348 5.348 14 N -0.368 5.368 15 C 0.131 3.869 16 H 0.119 0.881 17 C -0.146 4.146 18 C 0.058 3.942 19 N -0.682 5.682 20 C 0.051 3.949 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.277 0.723 25 H 0.184 0.816 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.355 0.645 31 H 0.081 0.919 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 -10.007 -0.485 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.212 4.212 3 C -0.073 4.073 4 C -0.499 4.499 5 H 0.089 0.911 6 C -0.190 4.190 7 N -0.506 5.506 8 Si 0.810 3.190 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.185 1.185 12 C -0.188 4.188 13 N -0.171 5.171 14 N -0.156 5.156 15 C 0.026 3.974 16 H 0.137 0.863 17 C -0.185 4.185 18 C -0.071 4.071 19 N -0.312 5.312 20 C -0.079 4.079 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.201 0.799 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.100 0.900 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.880 -11.177 -0.373 12.635 hybrid contribution -0.961 2.098 -0.260 2.322 sum -6.841 -9.079 -0.633 11.386 Atomic orbital electron populations 1.19923 0.86624 1.02187 1.01640 1.21525 0.94674 0.86852 1.18186 1.18399 0.90976 0.93781 1.04171 1.19000 0.93899 0.89858 1.47122 0.91056 1.26533 0.94391 1.05173 0.92904 1.69581 1.02091 1.35206 1.43692 0.85118 0.78662 0.76484 0.78780 1.19457 1.20117 1.18459 1.24861 1.00367 0.90227 1.03308 1.76451 0.98601 1.14619 1.27445 1.47555 1.02879 1.04522 1.60612 1.22919 0.99466 0.77527 0.97499 0.86306 1.23113 1.01304 0.96133 0.97970 1.22570 1.03239 0.94403 0.86895 1.61632 1.47255 1.11424 1.10903 1.22992 1.00953 0.87650 0.96321 0.91809 0.91647 0.91074 0.91307 0.79946 0.92815 0.89659 0.90476 0.89349 0.82713 0.90009 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.64 9.77 71.23 0.70 -0.94 16 2 C -0.09 -4.21 7.06 42.40 0.30 -3.91 16 3 C -0.06 -3.57 5.93 -21.30 -0.13 -3.70 16 4 C -0.46 -25.93 9.13 23.45 0.21 -25.72 16 5 H 0.07 3.77 7.34 -2.91 -0.02 3.74 16 6 C 0.02 0.89 5.49 85.17 0.47 1.35 16 7 N -0.87 -48.55 10.33 21.79 0.22 -48.33 16 8 Si 0.99 40.99 29.56 68.60 2.03 43.01 16 9 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 12 C 0.00 -0.17 10.91 85.82 0.94 0.77 16 13 N -0.35 -18.27 11.86 -55.94 -0.66 -18.93 16 14 N -0.37 -16.54 3.43 -304.51 -1.04 -17.59 16 15 C 0.13 4.28 3.80 46.47 0.18 4.45 16 16 H 0.12 3.23 6.74 -2.39 -0.02 3.22 16 17 C -0.15 -4.29 6.63 31.87 0.21 -4.08 16 18 C 0.06 1.27 7.57 86.65 0.66 1.93 16 19 N -0.68 -16.18 7.39 -504.42 -3.73 -19.91 16 20 C 0.05 1.57 7.25 86.78 0.63 2.20 16 21 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 22 H 0.06 2.41 7.59 -2.39 -0.02 2.39 16 23 H 0.07 2.07 7.09 -2.38 -0.02 2.06 16 24 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 25 H 0.18 10.97 5.77 -2.91 -0.02 10.95 16 26 H 0.05 1.96 7.82 -2.38 -0.02 1.95 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.36 6.15 8.91 -89.69 -0.80 5.35 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.09 7.94 -2.39 -0.02 2.07 16 Total: -1.00 -66.28 265.64 1.31 -64.98 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.33 Total: 24.42 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.16 Total: -27.65 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.21 Total: -104.76 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -66.28 1.31 -64.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.579 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds