Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39285 * 126.40443 * 2 1 4 4 C 1.41593 * 126.55665 * 359.73362 * 3 2 1 5 5 H 1.07999 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.39692 * 119.99834 * 180.02562 * 4 3 2 7 7 N 1.31027 * 120.00313 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99757 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47302 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47031 * 120.00052 * 8 6 4 11 11 H 1.48504 * 109.46842 * 239.99769 * 8 6 4 12 12 C 1.41883 * 106.88287 * 179.97438 * 3 2 1 13 13 N 1.30317 * 108.04937 * 0.02562 * 12 3 2 14 14 N 1.34495 * 126.40752 * 179.97438 * 2 1 3 15 15 C 1.46501 * 125.67829 * 0.04141 * 14 2 1 16 16 H 1.09004 * 110.27452 * 0.69873 * 15 14 2 17 17 C 1.54591 * 110.30933 * 238.60985 * 15 14 2 18 18 C 1.55105 * 102.84332 * 219.18013 * 17 15 14 19 19 N 1.48531 * 103.28471 * 37.30783 * 18 17 15 20 20 C 1.47906 * 105.82022 * 320.84580 * 19 18 17 21 21 H 1.08997 * 109.46951 * 90.02656 * 1 2 3 22 22 H 1.08997 * 109.47424 * 210.02677 * 1 2 3 23 23 H 1.08998 * 109.46945 * 330.03059 * 1 2 3 24 24 H 0.96994 * 120.00344 * 180.02562 * 7 6 4 25 25 H 1.07999 * 125.97184 * 180.02562 * 12 3 2 26 26 H 1.08994 * 110.72738 * 337.48279 * 17 15 14 27 27 H 1.08999 * 110.72535 * 100.77048 * 17 15 14 28 28 H 1.08995 * 110.59690 * 278.86902 * 18 17 15 29 29 H 1.09004 * 110.82697 * 155.84905 * 18 17 15 30 30 H 1.00902 * 111.00356 * 81.35781 * 19 18 17 31 31 H 1.09003 * 109.91095 * 265.97999 * 20 19 18 32 32 H 1.08999 * 110.08205 * 144.77260 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3336 1.1210 0.0000 4 6 1.9187 2.4748 -0.0053 5 1 0.8663 2.7170 -0.0103 6 6 2.8708 3.4971 -0.0051 7 7 4.1477 3.2032 0.0005 8 14 2.3234 5.2831 -0.0113 9 1 0.8398 5.3461 -0.0166 10 1 2.8441 5.9647 1.2010 11 1 2.8513 5.9583 -1.2240 12 6 3.6709 0.6469 0.0006 13 7 3.6374 -0.6558 0.0004 14 7 2.3053 -1.0824 0.0005 15 6 1.8546 -2.4764 0.0002 16 1 0.7656 -2.5213 -0.0129 17 6 2.4074 -3.2192 1.2382 18 6 2.7674 -4.6166 0.6695 19 7 3.2924 -4.3088 -0.6854 20 6 2.4350 -3.2256 -1.2136 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.8087 3.9130 0.0010 25 1 4.5609 1.2587 0.0012 26 1 3.2960 -2.7191 1.6232 27 1 1.6439 -3.3010 2.0118 28 1 1.8789 -5.2446 0.6044 29 1 3.5329 -5.0975 1.2786 30 1 4.2574 -4.0174 -0.6417 31 1 1.6267 -3.6492 -1.8097 32 1 3.0272 -2.5429 -1.8228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = 69.265168 kcal Electronic energy + Delta-G solvation = -15079.325970 eV Core-core repulsion = 12654.987513 eV Total energy + Delta-G solvation = -2424.338457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65678 -37.71108 -33.48256 -31.61783 -30.59280 -29.02029 -27.55374 -26.22881 -23.97112 -21.66489 -21.15225 -19.33038 -18.15263 -16.74183 -16.18083 -15.21085 -14.75980 -14.54251 -13.76378 -13.49956 -12.97567 -12.61029 -12.13213 -12.05521 -11.90948 -11.53620 -11.25398 -11.14424 -11.01075 -10.96397 -10.76545 -10.60815 -10.27811 -9.92493 -9.25602 -8.79151 -8.60732 -7.63047 -7.08139 -6.42684 -3.96031 3.01885 3.20482 3.25190 3.37866 3.79550 4.14073 4.40151 4.45373 4.91678 5.11166 5.32829 5.38869 5.52781 5.57407 5.73815 5.95150 6.01894 6.09718 6.17460 6.26839 6.36746 6.46551 6.73601 6.81097 6.91649 7.32187 7.45067 7.65271 7.68622 8.16642 8.57218 8.67699 9.07829 9.18423 9.52960 10.56939 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056165 B = 0.007235 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.407066 B = 3869.400080 C = 4141.339612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.099 4.099 3 C -0.015 4.015 4 C -0.433 4.433 5 H 0.069 0.931 6 C 0.065 3.935 7 N -0.842 5.842 8 Si 0.913 3.087 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.031 3.969 13 N -0.339 5.339 14 N -0.384 5.384 15 C 0.148 3.852 16 H 0.092 0.908 17 C -0.165 4.165 18 C 0.044 3.956 19 N -0.672 5.672 20 C 0.036 3.964 21 H 0.045 0.955 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.272 0.728 25 H 0.202 0.798 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.342 0.658 31 H 0.076 0.924 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 -8.223 0.774 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.220 4.220 3 C -0.025 4.025 4 C -0.467 4.467 5 H 0.087 0.913 6 C -0.145 4.145 7 N -0.475 5.475 8 Si 0.739 3.261 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.156 4.156 13 N -0.161 5.161 14 N -0.173 5.173 15 C 0.042 3.958 16 H 0.110 0.890 17 C -0.205 4.205 18 C -0.086 4.086 19 N -0.299 5.299 20 C -0.095 4.095 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.218 0.782 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.038 -9.808 0.394 10.275 hybrid contribution -0.471 2.490 0.587 2.602 sum -3.509 -7.318 0.980 8.175 Atomic orbital electron populations 1.19809 0.90192 1.00579 1.00063 1.20777 0.92471 0.87342 1.21425 1.17970 0.90345 0.92378 1.01792 1.18780 0.93508 0.89121 1.45308 0.91312 1.25636 0.94479 1.00858 0.93505 1.69459 1.01068 1.33784 1.43143 0.86183 0.79475 0.82349 0.78060 1.19044 1.20415 1.20395 1.25052 1.00353 0.89508 1.00693 1.76472 0.96973 1.15503 1.27118 1.47357 1.03822 1.02818 1.63258 1.22034 0.98513 0.79976 0.95285 0.89046 1.23508 1.02499 0.96663 0.97831 1.23078 1.00326 0.95802 0.89377 1.62785 1.06888 1.39175 1.21021 1.23081 0.97618 0.92069 0.96684 0.93589 0.94411 0.91546 0.91688 0.78230 0.89906 0.91049 0.90447 0.90817 0.84292 0.90547 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.94 9.74 36.01 0.35 -0.59 16 2 C -0.10 -2.39 7.06 -81.04 -0.57 -2.96 16 3 C -0.02 -0.41 5.93 -106.83 -0.63 -1.05 16 4 C -0.43 -11.80 9.13 -37.76 -0.34 -12.14 16 5 H 0.07 1.80 7.34 -52.49 -0.39 1.42 16 6 C 0.07 1.70 5.49 -17.35 -0.10 1.61 16 7 N -0.84 -22.40 10.33 55.54 0.57 -21.83 16 8 Si 0.91 19.72 29.56 -169.99 -5.02 14.69 16 9 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.03 0.83 10.91 -16.80 -0.18 0.65 16 13 N -0.34 -8.44 11.91 30.97 0.37 -8.07 16 14 N -0.38 -8.61 3.22 -48.48 -0.16 -8.77 16 15 C 0.15 2.59 3.75 -66.58 -0.25 2.34 16 16 H 0.09 1.47 6.72 -51.93 -0.35 1.12 16 17 C -0.16 -2.54 6.77 -24.78 -0.17 -2.71 16 18 C 0.04 0.56 7.55 -1.81 -0.01 0.55 16 19 N -0.67 -9.73 7.51 -109.98 -0.83 -10.56 16 20 C 0.04 0.59 7.24 -2.75 -0.02 0.57 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.64 7.11 -51.93 -0.37 0.27 16 23 H 0.07 1.30 7.59 -51.93 -0.39 0.91 16 24 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 25 H 0.20 5.55 5.77 -52.49 -0.30 5.24 16 26 H 0.08 1.50 7.77 -51.93 -0.40 1.09 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.34 5.02 8.92 -39.29 -0.35 4.67 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.48 7.81 -51.93 -0.41 1.07 16 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -28.75 265.45 -7.20 -35.95 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.21 Total: 8.32 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.93 Total: -13.74 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.04 Total: -49.23 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.75 -7.20 -35.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.218 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds