Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39285 * 126.40443 * 2 1 4 4 C 1.41593 * 126.55665 * 359.73362 * 3 2 1 5 5 H 1.07999 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.39692 * 119.99834 * 180.02562 * 4 3 2 7 7 N 1.31027 * 120.00313 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99757 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47302 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47031 * 120.00052 * 8 6 4 11 11 H 1.48504 * 109.46842 * 239.99769 * 8 6 4 12 12 C 1.41883 * 106.88287 * 179.97438 * 3 2 1 13 13 N 1.30317 * 108.04937 * 0.02562 * 12 3 2 14 14 N 1.34495 * 126.40752 * 179.97438 * 2 1 3 15 15 C 1.46501 * 125.67829 * 0.04141 * 14 2 1 16 16 H 1.09004 * 110.27452 * 0.69873 * 15 14 2 17 17 C 1.54591 * 110.30933 * 238.60985 * 15 14 2 18 18 C 1.55105 * 102.84332 * 219.18013 * 17 15 14 19 19 N 1.48531 * 103.28471 * 37.30783 * 18 17 15 20 20 C 1.47906 * 105.82022 * 320.84580 * 19 18 17 21 21 H 1.08997 * 109.46951 * 90.02656 * 1 2 3 22 22 H 1.08997 * 109.47424 * 210.02677 * 1 2 3 23 23 H 1.08998 * 109.46945 * 330.03059 * 1 2 3 24 24 H 0.96994 * 120.00344 * 180.02562 * 7 6 4 25 25 H 1.07999 * 125.97184 * 180.02562 * 12 3 2 26 26 H 1.08994 * 110.72738 * 337.48279 * 17 15 14 27 27 H 1.08999 * 110.72535 * 100.77048 * 17 15 14 28 28 H 1.08995 * 110.59690 * 278.86902 * 18 17 15 29 29 H 1.09004 * 110.82697 * 155.84905 * 18 17 15 30 30 H 1.00902 * 111.00356 * 81.35781 * 19 18 17 31 31 H 1.09003 * 109.91095 * 265.97999 * 20 19 18 32 32 H 1.08999 * 110.08205 * 144.77260 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3336 1.1210 0.0000 4 6 1.9187 2.4748 -0.0053 5 1 0.8663 2.7170 -0.0103 6 6 2.8708 3.4971 -0.0051 7 7 4.1477 3.2032 0.0005 8 14 2.3234 5.2831 -0.0113 9 1 0.8398 5.3461 -0.0166 10 1 2.8441 5.9647 1.2010 11 1 2.8513 5.9583 -1.2240 12 6 3.6709 0.6469 0.0006 13 7 3.6374 -0.6558 0.0004 14 7 2.3053 -1.0824 0.0005 15 6 1.8546 -2.4764 0.0002 16 1 0.7656 -2.5213 -0.0129 17 6 2.4074 -3.2192 1.2382 18 6 2.7674 -4.6166 0.6695 19 7 3.2924 -4.3088 -0.6854 20 6 2.4350 -3.2256 -1.2136 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 4.8087 3.9130 0.0010 25 1 4.5609 1.2587 0.0012 26 1 3.2960 -2.7191 1.6232 27 1 1.6439 -3.3010 2.0118 28 1 1.8789 -5.2446 0.6044 29 1 3.5329 -5.0975 1.2786 30 1 4.2574 -4.0174 -0.6417 31 1 1.6267 -3.6492 -1.8097 32 1 3.0272 -2.5429 -1.8228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622164.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = 49.448184 kcal Electronic energy + Delta-G solvation = -15080.185298 eV Core-core repulsion = 12654.987513 eV Total energy + Delta-G solvation = -2425.197786 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43034 -39.08968 -35.37952 -33.33056 -32.30670 -30.27854 -29.22107 -27.90060 -25.87027 -22.96263 -22.61681 -21.20080 -19.79980 -18.62022 -17.58917 -16.63095 -16.56305 -16.05795 -15.29080 -14.89787 -14.71285 -14.36233 -13.85516 -13.49191 -13.26650 -13.04139 -12.93317 -12.76122 -12.47854 -12.39157 -12.34506 -12.22967 -11.86342 -11.69623 -11.14328 -10.73345 -9.90746 -9.40991 -9.01702 -8.33848 -5.96490 1.26079 1.44098 1.55798 1.58068 2.13787 2.34244 2.41473 3.24812 3.56124 3.66113 3.77613 4.01679 4.17847 4.36205 4.43333 4.53769 4.59658 4.79545 4.86935 4.89543 4.96309 4.99016 5.08929 5.23519 5.33382 5.66855 5.74133 5.76038 6.14924 6.24136 6.61061 6.80210 7.14550 7.19394 7.57331 8.67176 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.056165 B = 0.007235 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.407066 B = 3869.400080 C = 4141.339612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.464 4.464 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.873 5.873 8 Si 0.986 3.014 9 H -0.260 1.260 10 H -0.274 1.274 11 H -0.274 1.274 12 C -0.004 4.004 13 N -0.347 5.347 14 N -0.370 5.370 15 C 0.130 3.870 16 H 0.117 0.883 17 C -0.160 4.160 18 C 0.053 3.947 19 N -0.670 5.670 20 C 0.044 3.956 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.276 0.724 25 H 0.184 0.816 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.338 0.662 31 H 0.100 0.900 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -9.652 0.981 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.211 4.211 3 C -0.075 4.075 4 C -0.499 4.499 5 H 0.088 0.912 6 C -0.190 4.190 7 N -0.506 5.506 8 Si 0.809 3.191 9 H -0.183 1.183 10 H -0.199 1.199 11 H -0.199 1.199 12 C -0.188 4.188 13 N -0.171 5.171 14 N -0.158 5.158 15 C 0.026 3.974 16 H 0.135 0.865 17 C -0.200 4.200 18 C -0.076 4.076 19 N -0.296 5.296 20 C -0.087 4.087 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.200 0.800 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.119 0.881 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.044 -11.278 0.602 12.369 hybrid contribution 0.102 2.711 0.526 2.764 sum -4.942 -8.566 1.128 9.954 Atomic orbital electron populations 1.19923 0.86740 1.02175 1.01619 1.21534 0.94682 0.86998 1.17923 1.18400 0.91045 0.93753 1.04311 1.19024 0.93848 0.89940 1.47045 0.91187 1.26513 0.94409 1.05111 0.92962 1.69581 1.02055 1.35082 1.43884 0.85084 0.79202 0.76723 0.78119 1.18339 1.19887 1.19897 1.24826 1.00287 0.90288 1.03438 1.76384 0.98595 1.14532 1.27612 1.47827 1.02854 1.04708 1.60401 1.22653 1.00147 0.77421 0.97176 0.86496 1.23462 1.01588 0.97586 0.97358 1.23190 1.01869 0.94429 0.88148 1.62859 1.06565 1.37992 1.22214 1.22998 0.97942 0.91865 0.95895 0.91861 0.90997 0.91745 0.91348 0.80018 0.93128 0.89019 0.87911 0.89058 0.84741 0.88142 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.68 9.74 71.24 0.69 -0.99 16 2 C -0.09 -4.14 7.06 42.40 0.30 -3.84 16 3 C -0.07 -3.66 5.93 -21.30 -0.13 -3.79 16 4 C -0.46 -25.96 9.13 23.45 0.21 -25.74 16 5 H 0.07 3.73 7.34 -2.91 -0.02 3.71 16 6 C 0.02 0.88 5.49 85.16 0.47 1.35 16 7 N -0.87 -48.42 10.33 21.79 0.22 -48.19 16 8 Si 0.99 41.08 29.56 68.60 2.03 43.10 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 12 C 0.00 -0.22 10.91 85.82 0.94 0.71 16 13 N -0.35 -17.78 11.91 -55.94 -0.67 -18.44 16 14 N -0.37 -16.35 3.22 -307.30 -0.99 -17.34 16 15 C 0.13 4.20 3.75 45.87 0.17 4.37 16 16 H 0.12 3.22 6.72 -2.39 -0.02 3.20 16 17 C -0.16 -4.50 6.77 31.86 0.22 -4.28 16 18 C 0.05 1.16 7.55 86.71 0.65 1.81 16 19 N -0.67 -17.76 7.51 -501.88 -3.77 -21.53 16 20 C 0.04 1.32 7.24 86.45 0.63 1.95 16 21 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.07 2.12 7.11 -2.39 -0.02 2.11 16 23 H 0.06 2.40 7.59 -2.39 -0.02 2.38 16 24 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 25 H 0.18 10.83 5.77 -2.91 -0.02 10.81 16 26 H 0.05 1.77 7.77 -2.39 -0.02 1.76 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.34 9.50 8.92 -89.69 -0.80 8.70 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.74 7.81 -2.39 -0.02 1.72 16 Total: -1.00 -64.56 265.45 1.31 -63.25 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.33 Total: 27.60 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.15 Total: -28.45 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.20 Total: -105.51 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -64.56 1.31 -63.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622164.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.699 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds