Wall clock time and date at job start Mon Mar 30 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 C 1.53002 * 109.47107 * 240.00247 * 2 1 3 5 5 C 1.50693 * 109.47189 * 120.00134 * 2 1 3 6 6 C 1.38375 * 120.32783 * 75.30969 * 5 2 1 7 7 C 1.40902 * 118.30787 * 180.24107 * 6 5 2 8 8 C 1.41539 * 120.61549 * 179.73496 * 7 6 5 9 9 H 1.08002 * 119.99686 * 359.71220 * 8 7 6 10 10 C 1.40105 * 119.99801 * 179.97438 * 8 7 6 11 11 N 1.30674 * 120.00075 * 359.71946 * 10 8 7 12 12 Si 1.86801 * 119.99777 * 179.72041 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99909 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00069 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99869 * 12 10 8 16 16 N 1.34022 * 118.76532 * 359.45271 * 7 6 5 17 17 C 1.32076 * 120.50868 * 0.28211 * 16 7 6 18 18 N 1.38386 * 119.07240 * 180.02562 * 17 16 7 19 19 N 1.32344 * 120.32779 * 255.00158 * 5 2 1 20 20 H 1.08994 * 109.47162 * 299.99969 * 1 2 3 21 21 H 1.09001 * 109.47300 * 59.99730 * 1 2 3 22 22 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47239 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47346 * 300.00241 * 3 2 1 25 25 H 1.09008 * 109.47143 * 59.99997 * 3 2 1 26 26 H 1.08997 * 109.47084 * 299.99731 * 4 2 1 27 27 H 1.09001 * 109.47022 * 59.99852 * 4 2 1 28 28 H 1.08996 * 109.47022 * 179.97438 * 4 2 1 29 29 H 1.07993 * 120.84099 * 359.96963 * 6 5 2 30 30 H 0.97004 * 119.99542 * 179.97438 * 11 10 8 31 31 H 0.96994 * 120.00280 * 359.97438 * 18 17 16 32 32 H 0.97005 * 120.00348 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.9797 -2.0908 1.3106 7 6 2.4562 -2.7106 2.4828 8 6 2.4203 -4.1190 2.6192 9 1 2.0208 -4.7286 1.8222 10 6 2.8981 -4.7218 3.7902 11 7 3.3819 -3.9841 4.7543 12 14 2.8435 -6.5800 3.9734 13 1 4.1050 -7.1659 3.4532 14 1 2.6889 -6.9317 5.4078 15 1 1.6932 -7.1196 3.2047 16 7 2.9494 -1.9422 3.4639 17 6 2.9818 -0.6282 3.3344 18 7 3.4979 0.1366 4.3658 19 7 2.5339 -0.0206 2.2424 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6768 -1.7488 -1.2493 27 1 1.6767 -0.2073 -2.1392 28 1 3.1300 -0.7208 -1.2495 29 1 1.5795 -2.6778 0.4973 30 1 3.7123 -4.4015 5.5652 31 1 3.8289 -0.2933 5.1698 32 1 3.5285 1.1028 4.2848 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260660392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:09 Heat of formation + Delta-G solvation = 27.894143 kcal Electronic energy + Delta-G solvation = -15094.751219 eV Core-core repulsion = 12668.618780 eV Total energy + Delta-G solvation = -2426.132439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11846 -36.27299 -34.17593 -32.59088 -30.87441 -28.61945 -26.97499 -26.75694 -25.80142 -22.56280 -21.18440 -19.02011 -17.52558 -15.99583 -15.47749 -14.85230 -14.28217 -14.04843 -13.83796 -13.36417 -12.98940 -12.82670 -12.76854 -11.80902 -11.63493 -11.33184 -11.28851 -11.15108 -10.73115 -10.48299 -10.47348 -10.33421 -10.04177 -9.83589 -9.16358 -8.91544 -8.37833 -7.26280 -6.81797 -6.34408 -4.67486 2.88190 3.04011 3.07954 3.11151 3.35930 3.93272 4.62388 4.85391 5.27463 5.44834 5.52942 5.89903 6.01242 6.06938 6.11306 6.28549 6.32273 6.40563 6.40734 6.53884 6.70679 6.81556 6.86017 6.95010 7.06353 7.15722 7.42817 7.76959 8.08620 8.38557 8.55587 8.76829 8.96471 9.33120 10.25046 10.45554 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.009030 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.050233 B = 3100.199309 C = 3741.176229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.015 4.015 3 C -0.117 4.117 4 C -0.133 4.133 5 C 0.201 3.799 6 C -0.352 4.352 7 C 0.303 3.697 8 C -0.427 4.427 9 H 0.086 0.914 10 C 0.071 3.929 11 N -0.711 5.711 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.261 1.261 16 N -0.563 5.563 17 C 0.551 3.449 18 N -0.846 5.846 19 N -0.655 5.655 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.272 0.728 31 H 0.402 0.598 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 3.679 -4.361 5.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.016 4.016 3 C -0.174 4.174 4 C -0.190 4.190 5 C 0.061 3.939 6 C -0.381 4.381 7 C 0.172 3.828 8 C -0.462 4.462 9 H 0.104 0.896 10 C -0.155 4.155 11 N -0.333 5.333 12 Si 0.732 3.268 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.185 1.185 16 N -0.291 5.291 17 C 0.190 3.810 18 N -0.395 5.395 19 N -0.386 5.386 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.340 4.171 -3.476 5.592 hybrid contribution -0.151 -1.182 -0.168 1.204 sum -1.491 2.988 -3.643 4.942 Atomic orbital electron populations 1.21782 0.94304 1.01777 1.00895 1.19334 0.94981 0.95217 0.92061 1.21564 1.00808 0.94768 1.00284 1.21843 1.01002 1.00418 0.95777 1.20282 0.91575 0.90222 0.91779 1.21950 1.18864 0.94792 1.02502 1.18455 0.85398 0.93292 0.85692 1.19597 1.34898 0.90281 1.01385 0.89635 1.26096 0.93705 1.00281 0.95419 1.70105 1.23155 1.36475 1.03553 0.86333 0.79735 0.82462 0.78314 1.19397 1.20146 1.18487 1.68917 1.27294 1.01191 1.31738 1.19511 0.88234 0.87356 0.85876 1.41435 1.71865 1.07587 1.18644 1.67271 1.26965 1.41058 1.03296 0.92915 0.93063 0.92525 0.93120 0.94303 0.92084 0.92168 0.93161 0.92917 0.87883 0.91703 0.76907 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.42 37.16 0.31 -1.81 16 2 C -0.01 -0.27 0.88 -155.66 -0.14 -0.41 16 3 C -0.12 -1.97 7.83 37.16 0.29 -1.68 16 4 C -0.13 -2.15 8.09 37.16 0.30 -1.85 16 5 C 0.20 4.68 5.57 -82.32 -0.46 4.22 16 6 C -0.35 -8.84 8.98 -38.52 -0.35 -9.18 16 7 C 0.30 8.47 6.58 -84.64 -0.56 7.91 16 8 C -0.43 -11.50 9.19 -37.62 -0.35 -11.85 16 9 H 0.09 2.15 7.85 -52.49 -0.41 1.73 16 10 C 0.07 1.81 5.50 -17.34 -0.10 1.72 16 11 N -0.71 -18.84 11.52 55.55 0.64 -18.20 16 12 Si 0.91 18.52 29.56 -169.99 -5.02 13.50 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 15 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 16 N -0.56 -15.81 8.06 -11.88 -0.10 -15.91 16 17 C 0.55 14.05 8.66 -323.04 -2.80 11.25 16 18 N -0.85 -17.44 9.07 29.73 0.27 -17.17 16 19 N -0.66 -16.00 9.19 -10.24 -0.09 -16.09 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.08 7.88 -51.92 -0.41 0.67 16 26 H 0.06 0.98 6.77 -51.93 -0.35 0.63 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.10 2.39 6.82 -52.49 -0.36 2.03 16 30 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 31 H 0.40 7.85 8.94 -40.82 -0.36 7.49 16 32 H 0.39 6.93 8.94 -40.82 -0.37 6.57 16 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -30.14 270.88 -8.41 -38.55 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -4.35 Total: 12.90 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.83 Total: -1.66 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: 0.72 Total: -67.36 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.14 -8.41 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.441 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds