Wall clock time and date at job start Mon Mar 30 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46935 * 2 1 4 4 C 1.53002 * 109.47107 * 240.00247 * 2 1 3 5 5 C 1.50693 * 109.47189 * 120.00134 * 2 1 3 6 6 C 1.38375 * 120.32783 * 75.30969 * 5 2 1 7 7 C 1.40902 * 118.30787 * 180.24107 * 6 5 2 8 8 C 1.41539 * 120.61549 * 179.73496 * 7 6 5 9 9 H 1.08002 * 119.99686 * 359.71220 * 8 7 6 10 10 C 1.40105 * 119.99801 * 179.97438 * 8 7 6 11 11 N 1.30674 * 120.00075 * 359.71946 * 10 8 7 12 12 Si 1.86801 * 119.99777 * 179.72041 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99909 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00069 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99869 * 12 10 8 16 16 N 1.34022 * 118.76532 * 359.45271 * 7 6 5 17 17 C 1.32076 * 120.50868 * 0.28211 * 16 7 6 18 18 N 1.38386 * 119.07240 * 180.02562 * 17 16 7 19 19 N 1.32344 * 120.32779 * 255.00158 * 5 2 1 20 20 H 1.08994 * 109.47162 * 299.99969 * 1 2 3 21 21 H 1.09001 * 109.47300 * 59.99730 * 1 2 3 22 22 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47239 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47346 * 300.00241 * 3 2 1 25 25 H 1.09008 * 109.47143 * 59.99997 * 3 2 1 26 26 H 1.08997 * 109.47084 * 299.99731 * 4 2 1 27 27 H 1.09001 * 109.47022 * 59.99852 * 4 2 1 28 28 H 1.08996 * 109.47022 * 179.97438 * 4 2 1 29 29 H 1.07993 * 120.84099 * 359.96963 * 6 5 2 30 30 H 0.97004 * 119.99542 * 179.97438 * 11 10 8 31 31 H 0.96994 * 120.00280 * 359.97438 * 18 17 16 32 32 H 0.97005 * 120.00348 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.9797 -2.0908 1.3106 7 6 2.4562 -2.7106 2.4828 8 6 2.4203 -4.1190 2.6192 9 1 2.0208 -4.7286 1.8222 10 6 2.8981 -4.7218 3.7902 11 7 3.3819 -3.9841 4.7543 12 14 2.8435 -6.5800 3.9734 13 1 4.1050 -7.1659 3.4532 14 1 2.6889 -6.9317 5.4078 15 1 1.6932 -7.1196 3.2047 16 7 2.9494 -1.9422 3.4639 17 6 2.9818 -0.6282 3.3344 18 7 3.4979 0.1366 4.3658 19 7 2.5339 -0.0206 2.2424 20 1 -0.3633 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6768 -1.7488 -1.2493 27 1 1.6767 -0.2073 -2.1392 28 1 3.1300 -0.7208 -1.2495 29 1 1.5795 -2.6778 0.4973 30 1 3.7123 -4.4015 5.5652 31 1 3.8289 -0.2933 5.1698 32 1 3.5285 1.1028 4.2848 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260660392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:09 Heat of formation + Delta-G solvation = 10.133435 kcal Electronic energy + Delta-G solvation = -15095.521381 eV Core-core repulsion = 12668.618780 eV Total energy + Delta-G solvation = -2426.902601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96117 -37.83718 -36.08044 -34.39062 -32.77042 -30.49446 -28.58938 -28.04930 -27.48552 -24.36038 -23.10067 -20.67068 -19.39958 -17.69948 -17.36695 -16.57241 -15.97613 -15.82200 -15.44316 -14.98466 -14.66760 -14.49877 -14.41049 -13.10847 -13.06349 -12.98893 -12.81021 -12.64931 -12.49236 -12.03958 -11.89241 -11.76021 -11.70844 -11.66742 -10.91953 -10.81307 -10.33990 -9.21677 -8.68916 -8.26082 -6.69149 1.06578 1.16197 1.40880 1.54841 1.61303 2.22111 2.88279 2.92919 3.74216 3.95516 4.06299 4.28890 4.41571 4.66846 4.82982 4.84995 4.94409 5.01373 5.04044 5.06859 5.09439 5.19071 5.27458 5.30398 5.51361 5.53659 5.64984 5.97050 6.10815 6.49668 6.71257 6.99879 7.02555 7.39683 8.37802 8.51547 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.009030 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.050233 B = 3100.199309 C = 3741.176229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.020 4.020 3 C -0.109 4.109 4 C -0.127 4.127 5 C 0.199 3.801 6 C -0.375 4.375 7 C 0.267 3.733 8 C -0.459 4.459 9 H 0.092 0.908 10 C 0.025 3.975 11 N -0.747 5.747 12 Si 0.990 3.010 13 H -0.262 1.262 14 H -0.267 1.267 15 H -0.254 1.254 16 N -0.595 5.595 17 C 0.530 3.470 18 N -0.828 5.828 19 N -0.657 5.657 20 H 0.039 0.961 21 H 0.089 0.911 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.113 0.887 30 H 0.280 0.720 31 H 0.407 0.593 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 3.676 -5.505 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.021 4.021 3 C -0.167 4.167 4 C -0.185 4.185 5 C 0.059 3.941 6 C -0.403 4.403 7 C 0.136 3.864 8 C -0.493 4.493 9 H 0.110 0.890 10 C -0.198 4.198 11 N -0.369 5.369 12 Si 0.810 3.190 13 H -0.187 1.187 14 H -0.192 1.192 15 H -0.178 1.178 16 N -0.325 5.325 17 C 0.169 3.831 18 N -0.379 5.379 19 N -0.388 5.388 20 H 0.058 0.942 21 H 0.108 0.892 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.237 0.763 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.892 4.208 -4.614 6.525 hybrid contribution 0.029 -1.075 0.184 1.091 sum -1.863 3.133 -4.430 5.737 Atomic orbital electron populations 1.21744 0.92546 1.01734 1.02139 1.19557 0.96329 0.95756 0.90422 1.21500 0.99854 0.93867 1.01438 1.21807 1.00213 1.00349 0.96125 1.21160 0.89782 0.90206 0.92972 1.22080 1.20006 0.95919 1.02248 1.18997 0.86203 0.94293 0.86898 1.19994 1.36065 0.90537 1.02666 0.88962 1.27063 0.92646 1.05685 0.94434 1.70193 1.23530 1.38966 1.04196 0.85095 0.79968 0.75316 0.78621 1.18697 1.19191 1.17772 1.68886 1.28687 1.02332 1.32580 1.20025 0.88498 0.87465 0.87144 1.41335 1.70720 1.08135 1.17704 1.67471 1.27104 1.40823 1.03363 0.94213 0.89227 0.93265 0.94528 0.90585 0.93448 0.92786 0.89407 0.94157 0.86897 0.90958 0.76336 0.76181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.42 71.98 0.61 -3.15 16 2 C -0.02 -0.68 0.88 -52.93 -0.05 -0.73 16 3 C -0.11 -3.42 7.83 71.98 0.56 -2.86 16 4 C -0.13 -3.83 8.09 71.98 0.58 -3.25 16 5 C 0.20 9.28 5.57 42.51 0.24 9.52 16 6 C -0.37 -19.15 8.98 22.96 0.21 -18.94 16 7 C 0.27 15.38 6.58 40.28 0.26 15.65 16 8 C -0.46 -25.29 9.19 23.54 0.22 -25.07 16 9 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 10 C 0.02 1.27 5.50 85.32 0.47 1.74 16 11 N -0.75 -40.29 11.52 21.85 0.25 -40.04 16 12 Si 0.99 37.98 29.56 68.60 2.03 40.01 16 13 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 14 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 16 N -0.59 -34.39 8.06 -191.49 -1.54 -35.93 16 17 C 0.53 27.50 8.66 261.57 2.27 29.76 16 18 N -0.83 -34.30 9.07 -59.85 -0.54 -34.84 16 19 N -0.66 -32.27 9.19 -186.30 -1.71 -33.98 16 20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.60 7.88 -2.38 -0.02 1.58 16 26 H 0.05 1.68 6.77 -2.39 -0.02 1.66 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 5.34 6.82 -2.91 -0.02 5.32 16 30 H 0.28 13.55 8.29 -92.71 -0.77 12.78 16 31 H 0.41 16.03 8.94 -92.71 -0.83 15.20 16 32 H 0.41 14.20 8.94 -92.70 -0.83 13.37 16 Total: -1.00 -66.49 270.88 3.33 -63.16 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.52 Total: 38.95 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.36 Total: 2.67 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -3.55 Total: -144.79 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -66.49 3.33 -63.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.296 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds