Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39284 * 126.40488 * 2 1 4 4 C 1.41597 * 126.55913 * 0.02562 * 3 2 1 5 5 H 1.07995 * 119.99472 * 341.31097 * 4 3 2 6 6 C 1.39689 * 119.99869 * 161.31287 * 4 3 2 7 7 N 1.31019 * 120.00262 * 336.94503 * 6 4 3 8 8 Si 1.86801 * 119.99759 * 156.94818 * 6 4 3 9 9 H 1.48505 * 109.46951 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47295 * 59.99848 * 8 6 4 11 11 H 1.48506 * 109.47214 * 299.99677 * 8 6 4 12 12 C 1.41887 * 106.88411 * 180.27897 * 3 2 1 13 13 N 1.30324 * 108.04638 * 359.55347 * 12 3 2 14 14 N 1.34501 * 126.40829 * 180.02562 * 2 1 3 15 15 C 1.46502 * 125.67435 * 0.02562 * 14 2 1 16 16 H 1.09003 * 109.90872 * 16.10417 * 15 14 2 17 17 C 1.53995 * 109.92036 * 254.99880 * 15 14 2 18 18 C 1.54595 * 105.14035 * 241.87370 * 17 15 14 19 19 C 1.54929 * 102.92307 * 21.95567 * 18 17 15 20 20 N 1.47902 * 109.91649 * 137.41236 * 15 14 2 21 21 H 1.09004 * 109.46796 * 89.98350 * 1 2 3 22 22 H 1.09001 * 109.47197 * 209.97966 * 1 2 3 23 23 H 1.08998 * 109.47132 * 329.98099 * 1 2 3 24 24 H 0.97003 * 120.00403 * 353.95809 * 7 6 4 25 25 H 1.07994 * 125.97928 * 179.71749 * 12 3 2 26 26 H 1.08999 * 110.30552 * 0.79273 * 17 15 14 27 27 H 1.09003 * 110.30415 * 122.85443 * 17 15 14 28 28 H 1.08998 * 110.71987 * 140.32019 * 18 17 15 29 29 H 1.09005 * 110.71892 * 263.59579 * 18 17 15 30 30 H 1.08999 * 110.66834 * 81.02034 * 19 18 17 31 31 H 1.09000 * 110.66882 * 203.98345 * 19 18 17 32 32 H 1.00906 * 110.99817 * 214.54330 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3336 1.1210 0.0000 4 6 1.9188 2.4749 0.0005 5 1 0.9134 2.7316 -0.2988 6 6 2.8100 3.4783 0.3881 7 7 3.8297 3.1874 1.1576 8 14 2.5478 5.2349 -0.1908 9 1 3.6229 6.1017 0.3554 10 1 1.2290 5.7221 0.2874 11 1 2.5829 5.2775 -1.6748 12 6 3.6709 0.6469 -0.0066 13 7 3.6374 -0.6559 -0.0006 14 7 2.3053 -1.0825 -0.0005 15 6 1.8546 -2.4764 -0.0016 16 1 0.8036 -2.5265 -0.2863 17 6 2.0492 -3.0920 1.3965 18 6 3.0475 -4.2543 1.1905 19 6 3.7630 -3.8670 -0.1280 20 7 2.6741 -3.2701 -0.9429 21 1 -0.3633 0.0003 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5141 24 1 3.9179 2.2959 1.5297 25 1 4.5609 1.2586 -0.0126 26 1 2.4653 -2.3525 2.0807 27 1 1.1008 -3.4691 1.7791 28 1 3.7584 -4.3028 2.0153 29 1 2.5192 -5.2012 1.0790 30 1 4.5477 -3.1345 0.0609 31 1 4.1729 -4.7506 -0.6171 32 1 2.1209 -3.9871 -1.3881 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 68.973205 kcal Electronic energy + Delta-G solvation = -15189.958776 eV Core-core repulsion = 12765.607659 eV Total energy + Delta-G solvation = -2424.351117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73115 -37.81328 -33.58534 -31.50594 -30.15477 -29.86935 -27.27153 -26.24262 -23.88322 -21.83470 -20.88504 -19.54287 -18.32693 -17.12425 -16.33325 -15.35951 -14.69500 -14.15392 -13.91027 -13.24814 -13.03842 -12.77680 -12.45219 -12.04859 -11.79219 -11.69418 -11.34019 -11.14045 -11.03957 -10.88105 -10.71965 -10.52042 -10.20052 -9.73737 -8.90179 -8.75786 -8.57371 -7.81513 -7.12321 -6.74991 -3.89276 3.14440 3.33977 3.40698 3.54937 3.73127 4.31309 4.32926 4.40075 4.78495 4.95803 5.09461 5.28331 5.47358 5.52162 5.68908 5.86001 5.99510 6.06323 6.11494 6.20198 6.34099 6.44665 6.56646 6.74135 6.83141 7.22418 7.44340 7.59094 7.90448 8.21571 8.36702 8.63817 9.02581 9.22141 9.44295 10.53629 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.007601 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.689911 B = 3682.978907 C = 3930.134336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.106 4.106 3 C -0.010 4.010 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.036 3.964 7 N -0.842 5.842 8 Si 1.064 2.936 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.280 1.280 12 C -0.013 4.013 13 N -0.298 5.298 14 N -0.365 5.365 15 C 0.332 3.668 16 H 0.091 0.909 17 C -0.157 4.157 18 C -0.153 4.153 19 C 0.049 3.951 20 N -0.670 5.670 21 H 0.043 0.957 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.289 0.711 25 H 0.164 0.836 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -10.515 -0.410 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.226 4.226 3 C -0.020 4.020 4 C -0.554 4.554 5 H 0.082 0.918 6 C -0.179 4.179 7 N -0.471 5.471 8 Si 0.890 3.110 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.206 1.206 12 C -0.201 4.201 13 N -0.120 5.120 14 N -0.156 5.156 15 C 0.136 3.864 16 H 0.109 0.891 17 C -0.198 4.198 18 C -0.193 4.193 19 C -0.080 4.080 20 N -0.299 5.299 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.181 0.819 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.195 -9.589 -0.674 9.860 hybrid contribution -1.665 -1.537 0.485 2.317 sum -3.860 -11.126 -0.189 11.778 Atomic orbital electron populations 1.19771 0.90042 1.00651 0.99891 1.20693 0.92545 0.86649 1.22740 1.17954 0.89772 0.92948 1.01341 1.19544 1.00900 0.90248 1.44712 0.91812 1.26589 0.92556 1.05707 0.93051 1.70551 1.28924 1.25463 1.22150 0.83653 0.76452 0.74003 0.76888 1.20406 1.20811 1.20642 1.23927 0.98599 0.91286 1.06242 1.76418 0.97880 1.13798 1.23867 1.47289 1.03371 1.02866 1.62099 1.21593 0.94342 0.79947 0.90475 0.89115 1.23191 0.99611 0.98388 0.98594 1.23096 0.98658 0.97522 1.00009 1.23123 0.95386 0.98706 0.90831 1.62131 1.12569 1.25632 1.29533 0.93839 0.94489 0.91407 0.89809 0.81892 0.90074 0.91134 0.90915 0.91872 0.88827 0.91235 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.90 9.68 36.00 0.35 -0.55 16 2 C -0.11 -2.61 7.06 -81.04 -0.57 -3.18 16 3 C -0.01 -0.29 5.55 -106.83 -0.59 -0.88 16 4 C -0.52 -14.61 8.94 -37.76 -0.34 -14.95 16 5 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 6 C 0.04 0.99 5.28 -17.36 -0.09 0.90 16 7 N -0.84 -23.86 12.66 55.53 0.70 -23.16 16 8 Si 1.06 23.32 29.99 -169.99 -5.10 18.22 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 C -0.01 -0.36 10.01 -16.80 -0.17 -0.53 16 13 N -0.30 -7.52 11.76 30.97 0.36 -7.16 16 14 N -0.36 -8.36 3.38 -51.68 -0.17 -8.53 16 15 C 0.33 5.81 4.02 -125.58 -0.50 5.31 16 16 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 17 C -0.16 -2.39 6.71 -25.37 -0.17 -2.56 16 18 C -0.15 -1.95 7.06 -24.88 -0.18 -2.12 16 19 C 0.05 0.70 7.41 -1.90 -0.01 0.69 16 20 N -0.67 -10.72 7.25 -106.41 -0.77 -11.49 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.63 7.41 -51.93 -0.38 0.24 16 23 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 24 H 0.29 8.35 6.23 -40.82 -0.25 8.10 16 25 H 0.16 4.44 6.92 -52.49 -0.36 4.08 16 26 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.34 4.26 8.92 -39.29 -0.35 3.91 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -31.18 266.73 -7.50 -38.68 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.26 Total: 7.29 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.28 Total: -17.87 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.12 Total: -50.34 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.10 Total: 18.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.18 -7.50 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.658 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds