Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39284 * 126.40488 * 2 1 4 4 C 1.41597 * 126.55913 * 0.02562 * 3 2 1 5 5 H 1.07995 * 119.99472 * 341.31097 * 4 3 2 6 6 C 1.39689 * 119.99869 * 161.31287 * 4 3 2 7 7 N 1.31019 * 120.00262 * 336.94503 * 6 4 3 8 8 Si 1.86801 * 119.99759 * 156.94818 * 6 4 3 9 9 H 1.48505 * 109.46951 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47295 * 59.99848 * 8 6 4 11 11 H 1.48506 * 109.47214 * 299.99677 * 8 6 4 12 12 C 1.41887 * 106.88411 * 180.27897 * 3 2 1 13 13 N 1.30324 * 108.04638 * 359.55347 * 12 3 2 14 14 N 1.34501 * 126.40829 * 180.02562 * 2 1 3 15 15 C 1.46502 * 125.67435 * 0.02562 * 14 2 1 16 16 H 1.09003 * 109.90872 * 16.10417 * 15 14 2 17 17 C 1.53995 * 109.92036 * 254.99880 * 15 14 2 18 18 C 1.54595 * 105.14035 * 241.87370 * 17 15 14 19 19 C 1.54929 * 102.92307 * 21.95567 * 18 17 15 20 20 N 1.47902 * 109.91649 * 137.41236 * 15 14 2 21 21 H 1.09004 * 109.46796 * 89.98350 * 1 2 3 22 22 H 1.09001 * 109.47197 * 209.97966 * 1 2 3 23 23 H 1.08998 * 109.47132 * 329.98099 * 1 2 3 24 24 H 0.97003 * 120.00403 * 353.95809 * 7 6 4 25 25 H 1.07994 * 125.97928 * 179.71749 * 12 3 2 26 26 H 1.08999 * 110.30552 * 0.79273 * 17 15 14 27 27 H 1.09003 * 110.30415 * 122.85443 * 17 15 14 28 28 H 1.08998 * 110.71987 * 140.32019 * 18 17 15 29 29 H 1.09005 * 110.71892 * 263.59579 * 18 17 15 30 30 H 1.08999 * 110.66834 * 81.02034 * 19 18 17 31 31 H 1.09000 * 110.66882 * 203.98345 * 19 18 17 32 32 H 1.00906 * 110.99817 * 214.54330 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3336 1.1210 0.0000 4 6 1.9188 2.4749 0.0005 5 1 0.9134 2.7316 -0.2988 6 6 2.8100 3.4783 0.3881 7 7 3.8297 3.1874 1.1576 8 14 2.5478 5.2349 -0.1908 9 1 3.6229 6.1017 0.3554 10 1 1.2290 5.7221 0.2874 11 1 2.5829 5.2775 -1.6748 12 6 3.6709 0.6469 -0.0066 13 7 3.6374 -0.6559 -0.0006 14 7 2.3053 -1.0825 -0.0005 15 6 1.8546 -2.4764 -0.0016 16 1 0.8036 -2.5265 -0.2863 17 6 2.0492 -3.0920 1.3965 18 6 3.0475 -4.2543 1.1905 19 6 3.7630 -3.8670 -0.1280 20 7 2.6741 -3.2701 -0.9429 21 1 -0.3633 0.0003 -1.0277 22 1 -0.3634 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5141 24 1 3.9179 2.2959 1.5297 25 1 4.5609 1.2586 -0.0126 26 1 2.4653 -2.3525 2.0807 27 1 1.1008 -3.4691 1.7791 28 1 3.7584 -4.3028 2.0153 29 1 2.5192 -5.2012 1.0790 30 1 4.5477 -3.1345 0.0609 31 1 4.1729 -4.7506 -0.6171 32 1 2.1209 -3.9871 -1.3881 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726379.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = 46.973837 kcal Electronic energy + Delta-G solvation = -15190.912740 eV Core-core repulsion = 12765.607659 eV Total energy + Delta-G solvation = -2425.305082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54288 -39.20369 -35.56248 -33.30373 -31.87506 -31.08439 -28.89462 -27.97842 -25.86143 -23.36996 -22.09972 -21.47103 -20.02250 -19.01033 -17.73673 -16.95581 -16.07570 -15.69925 -15.65561 -14.91122 -14.66676 -14.54064 -14.28464 -13.46693 -13.32395 -13.18994 -12.96265 -12.68620 -12.54207 -12.33463 -12.23422 -11.90965 -11.78662 -11.62161 -10.87231 -10.70761 -9.88598 -9.66371 -9.15878 -8.84249 -5.99280 1.27872 1.56279 1.61941 1.85411 2.06189 2.29325 2.51751 3.15249 3.40910 3.56141 3.76022 3.87422 4.10586 4.35450 4.41534 4.46365 4.56316 4.64129 4.79201 4.85358 4.92011 4.95696 5.11527 5.15799 5.30425 5.56568 5.62386 5.83733 6.11816 6.23767 6.34966 6.82029 6.97883 7.22846 7.44068 8.42564 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.007601 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.689911 B = 3682.978907 C = 3930.134336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.549 4.549 5 H 0.062 0.938 6 C -0.007 4.007 7 N -0.869 5.869 8 Si 1.118 2.882 9 H -0.279 1.279 10 H -0.261 1.261 11 H -0.270 1.270 12 C -0.042 4.042 13 N -0.308 5.308 14 N -0.352 5.352 15 C 0.313 3.687 16 H 0.118 0.882 17 C -0.153 4.153 18 C -0.140 4.140 19 C 0.047 3.953 20 N -0.685 5.685 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.272 0.728 25 H 0.146 0.854 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -12.571 -0.889 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.212 4.212 3 C -0.071 4.071 4 C -0.583 4.583 5 H 0.080 0.920 6 C -0.216 4.216 7 N -0.498 5.498 8 Si 0.937 3.063 9 H -0.204 1.204 10 H -0.186 1.186 11 H -0.196 1.196 12 C -0.226 4.226 13 N -0.133 5.133 14 N -0.143 5.143 15 C 0.120 3.880 16 H 0.136 0.864 17 C -0.194 4.194 18 C -0.179 4.179 19 C -0.082 4.082 20 N -0.317 5.317 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.163 0.837 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.310 -11.710 -1.161 12.532 hybrid contribution -1.090 -1.186 0.606 1.721 sum -5.400 -12.896 -0.555 13.992 Atomic orbital electron populations 1.19899 0.86537 1.02252 1.01561 1.21493 0.94807 0.86444 1.18461 1.18355 0.90591 0.94180 1.03997 1.19735 1.01258 0.91174 1.46128 0.91988 1.28042 0.91823 1.09570 0.92185 1.70667 1.30432 1.24518 1.24180 0.82982 0.77211 0.69212 0.76897 1.20416 1.18580 1.19561 1.23712 0.98316 0.91981 1.08640 1.76367 0.99558 1.12818 1.24523 1.47929 1.02325 1.05034 1.59008 1.22180 0.95714 0.77570 0.92535 0.86404 1.23155 1.01866 0.98252 0.96106 1.23062 0.98028 0.98022 0.98812 1.23085 0.94267 0.98628 0.92202 1.61916 1.13118 1.26920 1.29766 0.91893 0.90682 0.92020 0.91670 0.83690 0.93913 0.87702 0.90783 0.88092 0.92933 0.88060 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.65 9.68 71.24 0.69 -0.96 16 2 C -0.09 -4.27 7.06 42.40 0.30 -3.97 16 3 C -0.06 -3.50 5.55 -21.30 -0.12 -3.61 16 4 C -0.55 -31.76 8.94 23.45 0.21 -31.55 16 5 H 0.06 3.46 7.88 -2.91 -0.02 3.44 16 6 C -0.01 -0.41 5.28 85.16 0.45 0.04 16 7 N -0.87 -51.67 12.66 21.79 0.28 -51.39 16 8 Si 1.12 47.79 29.99 68.60 2.06 49.85 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 12 C -0.04 -2.40 10.01 85.82 0.86 -1.54 16 13 N -0.31 -16.05 11.76 -55.93 -0.66 -16.71 16 14 N -0.35 -15.87 3.38 -317.42 -1.07 -16.94 16 15 C 0.31 10.06 4.02 129.37 0.52 10.58 16 16 H 0.12 3.16 7.06 -2.39 -0.02 3.15 16 17 C -0.15 -4.20 6.71 31.47 0.21 -3.99 16 18 C -0.14 -3.05 7.06 31.80 0.22 -2.82 16 19 C 0.05 1.25 7.41 86.65 0.64 1.89 16 20 N -0.69 -19.93 7.25 -490.57 -3.56 -23.49 16 21 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 22 H 0.07 2.23 7.41 -2.39 -0.02 2.22 16 23 H 0.06 2.41 7.92 -2.39 -0.02 2.39 16 24 H 0.27 16.80 6.23 -92.71 -0.58 16.22 16 25 H 0.15 8.58 6.92 -2.91 -0.02 8.56 16 26 H 0.04 1.51 7.93 -2.39 -0.02 1.49 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.05 1.83 7.69 -2.39 -0.02 1.81 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.36 7.58 8.92 -89.69 -0.80 6.78 16 Total: -1.00 -71.59 266.73 1.54 -70.05 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.51 Total: 24.59 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.99 Total: -35.95 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -5.01 Total: -108.54 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.06 Total: 49.85 kcal Total: -71.59 1.54 -70.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726379.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.023 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds