Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32287 * 120.39962 * 2 1 4 4 C 1.32478 * 120.74254 * 179.97438 * 3 2 1 5 5 N 1.38409 * 119.21688 * 180.02562 * 4 3 2 6 6 N 1.32508 * 121.56431 * 359.74141 * 4 3 2 7 7 C 1.32255 * 120.74063 * 0.51807 * 6 4 3 8 8 C 1.50697 * 120.40442 * 179.76458 * 7 6 4 9 9 C 1.52997 * 109.47466 * 269.72483 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.38580 * 120.40217 * 179.97438 * 2 1 3 19 19 C 1.50695 * 120.72223 * 0.04969 * 18 2 1 20 20 H 1.08999 * 109.46904 * 270.02234 * 1 2 3 21 21 H 1.08992 * 109.47120 * 30.02703 * 1 2 3 22 22 H 1.09001 * 109.46531 * 150.02922 * 1 2 3 23 23 H 0.96997 * 120.00343 * 0.02562 * 5 4 3 24 24 H 0.97003 * 120.00068 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47120 * 149.72236 * 8 7 6 26 26 H 1.08998 * 109.46862 * 29.73038 * 8 7 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 30 30 H 1.08992 * 109.47565 * 269.97439 * 19 18 2 31 31 H 1.09001 * 109.46934 * 29.97381 * 19 18 2 32 32 H 1.09000 * 109.47396 * 149.97423 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1764 1.1410 0.0000 4 6 3.5012 1.1489 0.0005 5 7 4.1695 2.3610 0.0010 6 7 4.2016 0.0241 0.0061 7 6 3.5939 -1.1506 0.0012 8 6 4.3980 -2.4252 0.0023 9 6 4.6707 -2.8575 -1.4398 10 6 5.4752 -4.1318 -1.4386 11 1 5.7629 -4.5879 -0.5029 12 6 5.8432 -4.7158 -2.6322 13 7 5.4924 -4.1607 -3.7716 14 14 6.8399 -6.2957 -2.6307 15 1 7.1033 -6.7135 -1.2302 16 1 6.0785 -7.3619 -3.3299 17 1 8.1295 -6.0680 -3.3307 18 6 2.2083 -1.1952 0.0005 19 6 1.4806 -2.5148 0.0000 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3632 -0.8903 -0.5134 23 1 3.6682 3.1913 0.0014 24 1 5.1394 2.3800 0.0018 25 1 3.8389 -3.2070 0.5164 26 1 5.3443 -2.2573 0.5164 27 1 5.2297 -2.0757 -1.9539 28 1 3.7243 -3.0254 -1.9538 29 1 5.7516 -4.5714 -4.6112 30 1 1.3048 -2.8333 1.0274 31 1 0.5260 -2.4031 -0.5141 32 1 2.0846 -3.2627 -0.5138 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260847704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 26.626991 kcal Electronic energy + Delta-G solvation = -14654.214125 eV Core-core repulsion = 12228.026738 eV Total energy + Delta-G solvation = -2426.187387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68247 -35.70500 -34.77787 -33.02055 -32.00945 -30.30140 -28.72631 -26.35758 -25.02594 -22.25030 -21.64341 -20.25957 -17.85478 -16.80587 -16.21047 -15.51130 -15.03178 -14.44301 -14.10962 -13.40426 -13.19443 -13.09147 -12.82074 -12.45075 -12.33839 -12.04831 -11.48128 -11.22400 -10.94423 -10.68235 -10.48047 -10.21733 -10.04786 -9.88497 -9.29051 -9.16333 -8.55128 -8.35998 -7.72659 -6.00636 -4.03830 1.58504 1.68088 3.31479 3.38957 3.42885 3.45359 4.28363 4.45175 4.50921 4.91544 5.22459 5.35385 5.37893 5.53148 5.59585 5.69324 5.87581 6.01785 6.08178 6.29898 6.41539 6.51625 6.59166 6.80046 7.00277 7.33594 7.51788 7.66158 7.70828 7.84496 7.98490 8.37288 8.81926 9.02754 9.60191 11.10564 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036836 B = 0.006754 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.948036 B = 4144.585250 C = 4567.507841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.204 3.796 3 N -0.586 5.586 4 C 0.558 3.442 5 N -0.829 5.829 6 N -0.569 5.569 7 C 0.243 3.757 8 C -0.072 4.072 9 C 0.035 3.965 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.249 4.249 19 C -0.100 4.100 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.408 0.592 24 H 0.412 0.588 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 8.035 7.728 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.058 3.942 3 N -0.310 5.310 4 C 0.199 3.801 5 N -0.379 5.379 6 N -0.292 5.292 7 C 0.096 3.904 8 C -0.110 4.110 9 C -0.003 4.003 10 C -0.558 4.558 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.256 4.256 19 C -0.158 4.158 20 H 0.098 0.902 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.238 0.762 24 H 0.242 0.758 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.572 8.874 7.551 13.896 hybrid contribution 0.435 -1.076 -0.209 1.179 sum -7.137 7.798 7.342 12.871 Atomic orbital electron populations 1.20757 0.88607 1.03654 1.03052 1.21121 0.96503 0.87109 0.89428 1.67576 1.07679 1.30973 1.24789 1.19289 0.85211 0.86904 0.88706 1.41587 1.09450 1.03457 1.83365 1.67784 1.40802 0.97615 1.22955 1.21860 0.90845 0.93302 0.84421 1.20917 0.98036 0.89166 1.02860 1.19025 0.97100 0.96321 0.87855 1.21227 1.33963 1.08155 0.92487 0.92336 1.25018 0.96152 0.97602 0.95606 1.69987 1.46302 1.39702 0.97279 0.86518 0.79918 0.83338 0.78122 1.19650 1.21008 1.21029 1.20976 0.95338 0.97297 1.11998 1.20641 0.99743 0.93613 1.01778 0.90211 0.90612 0.89868 0.76170 0.75778 0.90631 0.90885 0.96155 0.96263 0.93014 0.91881 0.91794 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.84 36.01 0.35 -0.85 16 2 C 0.20 3.36 6.82 -82.27 -0.56 2.80 16 3 N -0.59 -10.27 10.40 -10.16 -0.11 -10.37 16 4 C 0.56 10.07 8.67 -322.80 -2.80 7.27 16 5 N -0.83 -11.10 9.07 29.76 0.27 -10.83 16 6 N -0.57 -11.58 10.40 -10.15 -0.11 -11.69 16 7 C 0.24 4.93 6.08 -82.27 -0.50 4.43 16 8 C -0.07 -1.53 4.80 -27.89 -0.13 -1.66 16 9 C 0.03 0.91 4.84 -27.88 -0.14 0.77 16 10 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C -0.25 -4.41 5.91 -104.35 -0.62 -5.03 16 19 C -0.10 -1.49 8.89 36.00 0.32 -1.17 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.08 0.85 6.07 -51.93 -0.32 0.54 16 23 H 0.41 4.38 8.94 -40.82 -0.37 4.01 16 24 H 0.41 4.88 8.94 -40.82 -0.37 4.51 16 25 H 0.08 1.47 6.81 -51.93 -0.35 1.12 16 26 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.52 7.47 -51.93 -0.39 0.13 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.80 6.07 -51.93 -0.32 0.49 16 32 H 0.08 1.41 6.06 -51.93 -0.31 1.10 16 LS Contribution 271.55 15.07 4.09 4.09 Total: -1.00 -32.73 271.55 -8.69 -41.42 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.07 Total: 3.86 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -4.48 Total: -6.78 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.80 Total: -59.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.73 -8.69 -41.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.044 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds