Wall clock time and date at job start Mon Mar 30 2020 02:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32287 * 120.39962 * 2 1 4 4 C 1.32478 * 120.74254 * 179.97438 * 3 2 1 5 5 N 1.38409 * 119.21688 * 180.02562 * 4 3 2 6 6 N 1.32508 * 121.56431 * 359.74141 * 4 3 2 7 7 C 1.32255 * 120.74063 * 0.51807 * 6 4 3 8 8 C 1.50697 * 120.40442 * 179.76458 * 7 6 4 9 9 C 1.52997 * 109.47466 * 269.72483 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.38580 * 120.40217 * 179.97438 * 2 1 3 19 19 C 1.50695 * 120.72223 * 0.04969 * 18 2 1 20 20 H 1.08999 * 109.46904 * 270.02234 * 1 2 3 21 21 H 1.08992 * 109.47120 * 30.02703 * 1 2 3 22 22 H 1.09001 * 109.46531 * 150.02922 * 1 2 3 23 23 H 0.96997 * 120.00343 * 0.02562 * 5 4 3 24 24 H 0.97003 * 120.00068 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47120 * 149.72236 * 8 7 6 26 26 H 1.08998 * 109.46862 * 29.73038 * 8 7 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 30 30 H 1.08992 * 109.47565 * 269.97439 * 19 18 2 31 31 H 1.09001 * 109.46934 * 29.97381 * 19 18 2 32 32 H 1.09000 * 109.47396 * 149.97423 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1764 1.1410 0.0000 4 6 3.5012 1.1489 0.0005 5 7 4.1695 2.3610 0.0010 6 7 4.2016 0.0241 0.0061 7 6 3.5939 -1.1506 0.0012 8 6 4.3980 -2.4252 0.0023 9 6 4.6707 -2.8575 -1.4398 10 6 5.4752 -4.1318 -1.4386 11 1 5.7629 -4.5879 -0.5029 12 6 5.8432 -4.7158 -2.6322 13 7 5.4924 -4.1607 -3.7716 14 14 6.8399 -6.2957 -2.6307 15 1 7.1033 -6.7135 -1.2302 16 1 6.0785 -7.3619 -3.3299 17 1 8.1295 -6.0680 -3.3307 18 6 2.2083 -1.1952 0.0005 19 6 1.4806 -2.5148 0.0000 20 1 -0.3633 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3632 -0.8903 -0.5134 23 1 3.6682 3.1913 0.0014 24 1 5.1394 2.3800 0.0018 25 1 3.8389 -3.2070 0.5164 26 1 5.3443 -2.2573 0.5164 27 1 5.2297 -2.0757 -1.9539 28 1 3.7243 -3.0254 -1.9538 29 1 5.7516 -4.5714 -4.6112 30 1 1.3048 -2.8333 1.0274 31 1 0.5260 -2.4031 -0.5141 32 1 2.0846 -3.2627 -0.5138 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847704.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:40 Heat of formation + Delta-G solvation = 5.712527 kcal Electronic energy + Delta-G solvation = -14655.121044 eV Core-core repulsion = 12228.026738 eV Total energy + Delta-G solvation = -2427.094306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03798 -37.12916 -36.22406 -34.93072 -33.35445 -32.09060 -29.84373 -28.04156 -26.58328 -24.03397 -22.93344 -21.92260 -19.21354 -18.59039 -17.86470 -16.70806 -16.59811 -16.23502 -15.42460 -14.96145 -14.80469 -14.29270 -14.26073 -13.93876 -13.68357 -13.44577 -13.10240 -12.87806 -12.52726 -12.50356 -11.97914 -11.89427 -11.71438 -11.29397 -11.28349 -10.98835 -10.56690 -9.98548 -9.00204 -8.19446 -6.31548 0.21818 0.28970 1.42607 1.43165 1.56816 2.25469 2.42455 2.91123 3.14251 3.20997 3.62874 3.98110 4.09617 4.30153 4.50352 4.68197 4.71957 4.76670 4.77818 4.91735 5.00721 5.12904 5.21167 5.28519 5.47083 5.59906 5.66539 5.82146 6.06288 6.19927 6.45286 6.45826 6.84315 7.38011 7.51600 8.92819 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036836 B = 0.006754 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.948036 B = 4144.585250 C = 4567.507841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.203 3.797 3 N -0.589 5.589 4 C 0.542 3.458 5 N -0.811 5.811 6 N -0.600 5.600 7 C 0.212 3.788 8 C -0.056 4.056 9 C 0.048 3.952 10 C -0.539 4.539 11 H 0.068 0.932 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.969 3.031 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.282 1.282 18 C -0.258 4.258 19 C -0.096 4.096 20 H 0.104 0.896 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.422 0.578 24 H 0.418 0.582 25 H 0.093 0.907 26 H 0.064 0.936 27 H -0.022 1.022 28 H -0.001 1.001 29 H 0.263 0.737 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 7.656 8.737 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.056 3.944 3 N -0.314 5.314 4 C 0.182 3.818 5 N -0.362 5.362 6 N -0.325 5.325 7 C 0.066 3.934 8 C -0.094 4.094 9 C 0.010 3.990 10 C -0.577 4.577 11 H 0.086 0.914 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.182 1.182 16 H -0.202 1.202 17 H -0.208 1.208 18 C -0.265 4.265 19 C -0.153 4.153 20 H 0.122 0.878 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.255 0.745 24 H 0.250 0.750 25 H 0.112 0.888 26 H 0.083 0.917 27 H -0.004 1.004 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.720 8.525 8.578 14.909 hybrid contribution 0.751 -0.845 -0.526 1.247 sum -7.969 7.680 8.052 13.686 Atomic orbital electron populations 1.20914 0.84864 1.04918 1.04938 1.21932 0.98799 0.86250 0.87422 1.67745 1.07270 1.31448 1.24890 1.19677 0.85814 0.87466 0.88821 1.41566 1.09918 1.02712 1.81981 1.67687 1.41956 0.98417 1.24407 1.21747 0.92136 0.92816 0.86692 1.20607 0.98385 0.90828 0.99556 1.18769 0.95145 0.94676 0.90426 1.21656 1.34148 1.08813 0.93054 0.91417 1.26005 0.97263 1.01430 0.95085 1.70129 1.47659 1.41628 0.98078 0.85342 0.77972 0.78591 0.78794 1.18181 1.20158 1.20759 1.21275 0.94427 0.99204 1.11641 1.20667 1.00025 0.91356 1.03274 0.87752 0.89773 0.88148 0.74539 0.74975 0.88822 0.91688 1.00377 0.98274 0.92792 0.89495 0.89140 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.84 71.24 0.70 -1.28 16 2 C 0.20 6.30 6.82 42.57 0.29 6.59 16 3 N -0.59 -19.89 10.40 -186.04 -1.93 -21.82 16 4 C 0.54 19.39 8.67 261.49 2.27 21.66 16 5 N -0.81 -21.12 9.07 -59.75 -0.54 -21.67 16 6 N -0.60 -24.94 10.40 -186.03 -1.93 -26.87 16 7 C 0.21 8.76 6.08 42.59 0.26 9.02 16 8 C -0.06 -2.45 4.80 29.85 0.14 -2.30 16 9 C 0.05 2.60 4.84 29.85 0.14 2.75 16 10 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 11 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 14 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 C -0.26 -8.94 5.91 -19.69 -0.12 -9.06 16 19 C -0.10 -2.69 8.89 71.23 0.63 -2.06 16 20 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.10 1.67 6.07 -2.39 -0.01 1.65 16 23 H 0.42 8.49 8.94 -92.71 -0.83 7.66 16 24 H 0.42 9.74 8.94 -92.71 -0.83 8.91 16 25 H 0.09 3.68 6.81 -2.39 -0.02 3.66 16 26 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 27 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 28 H 0.00 -0.06 7.47 -2.39 -0.02 -0.08 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.01 6.07 -2.39 -0.01 2.00 16 32 H 0.06 1.88 6.06 -2.39 -0.01 1.87 16 Total: -1.00 -72.12 271.55 2.41 -69.70 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.51 Total: 16.51 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.02 Total: -4.72 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -4.12 Total: -127.70 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -72.12 2.41 -69.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847704.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.414 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds