Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34370 * 125.95166 * 2 1 4 4 C 1.29891 * 109.19439 * 180.02562 * 3 2 1 5 5 N 1.35636 * 108.59438 * 359.85687 * 4 3 2 6 6 C 1.34938 * 125.95459 * 179.97438 * 2 1 3 7 7 C 1.50695 * 126.67689 * 0.07691 * 6 2 1 8 8 C 1.46525 * 123.85184 * 180.23195 * 5 4 3 9 9 C 1.53408 * 108.23938 * 16.27396 * 8 5 4 10 10 H 1.08999 * 109.44066 * 70.35921 * 9 8 5 11 11 C 1.50706 * 109.43728 * 190.28579 * 9 8 5 12 12 H 1.07995 * 120.00167 * 359.72195 * 11 9 8 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 N 1.46974 * 109.65338 * 310.33662 * 9 8 5 20 20 C 1.47331 * 111.17224 * 70.81197 * 19 9 8 21 21 H 1.08996 * 109.47296 * 270.02649 * 1 2 3 22 22 H 1.09003 * 109.46788 * 30.02559 * 1 2 3 23 23 H 1.09004 * 109.47229 * 150.02018 * 1 2 3 24 24 H 1.08998 * 109.47763 * 269.98050 * 7 6 2 25 25 H 1.08999 * 109.47001 * 29.98652 * 7 6 2 26 26 H 1.09002 * 109.46949 * 149.98014 * 7 6 2 27 27 H 1.09007 * 109.70836 * 256.58542 * 8 5 4 28 28 H 1.08996 * 109.71011 * 135.96311 * 8 5 4 29 29 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 30 30 H 1.00899 * 111.00360 * 194.88601 * 19 9 8 31 31 H 1.09003 * 109.73329 * 190.15815 * 20 19 9 32 32 H 1.08995 * 109.78000 * 69.47185 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2959 1.0877 0.0000 4 6 3.5396 0.7132 -0.0005 5 7 3.5831 -0.6424 0.0023 6 6 2.2993 -1.0923 0.0005 7 6 1.8494 -2.5305 -0.0005 8 6 4.8255 -1.4192 0.0075 9 6 5.9729 -0.4870 0.4174 10 1 5.8744 -0.2327 1.4727 11 6 7.2901 -1.1830 0.1899 12 1 7.3087 -2.1891 -0.2022 13 6 8.4714 -0.5370 0.4873 14 7 8.4486 0.6862 0.9698 15 14 10.1041 -1.3994 0.2047 16 1 10.5833 -1.1136 -1.1716 17 1 11.1013 -0.9060 1.1884 18 1 9.9260 -2.8640 0.3726 19 7 5.9233 0.7415 -0.3879 20 6 4.7750 1.5819 -0.0063 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 1.7402 -2.8779 1.0269 25 1 0.8920 -2.6114 -0.5152 26 1 2.5908 -3.1427 -0.5140 27 1 5.0140 -1.8179 -0.9893 28 1 4.7441 -2.2381 0.7222 29 1 9.2796 1.1404 1.1794 30 1 6.7880 1.2565 -0.3156 31 1 4.6538 2.3895 -0.7283 32 1 4.9368 1.9983 0.9879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260860393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 49.635865 kcal Electronic energy + Delta-G solvation = -15192.072660 eV Core-core repulsion = 12766.883013 eV Total energy + Delta-G solvation = -2425.189647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70047 -36.43362 -33.20178 -32.88125 -31.51483 -29.60401 -27.85865 -26.14518 -24.83274 -22.56896 -21.40423 -19.31753 -18.10850 -16.84849 -15.64519 -15.36829 -15.00239 -14.21132 -13.83764 -13.45165 -13.29643 -12.96913 -12.67108 -12.39639 -12.26063 -12.09628 -11.91785 -11.61632 -11.11862 -11.06767 -10.87893 -10.70828 -10.00381 -9.47438 -9.32455 -8.87177 -8.81108 -7.53029 -7.18597 -6.35571 -4.42509 2.62039 3.17044 3.24295 3.26156 3.51687 3.61785 4.21464 4.81894 4.96659 5.22813 5.39287 5.52793 5.59765 5.67828 5.70911 5.84855 5.97327 6.02943 6.09817 6.19420 6.21071 6.25283 6.28404 6.59175 7.06466 7.10607 7.39286 7.61327 7.67964 7.89759 8.26439 8.63215 8.75464 8.80478 9.27142 10.74291 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053564 B = 0.007625 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.615544 B = 3671.473675 C = 4109.481170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.020 4.020 3 N -0.499 5.499 4 C 0.224 3.776 5 N -0.439 5.439 6 C -0.037 4.037 7 C -0.069 4.069 8 C 0.114 3.886 9 C 0.205 3.795 10 H 0.009 0.991 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.069 3.931 14 N -0.897 5.897 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.273 1.273 19 N -0.685 5.685 20 C 0.138 3.862 21 H 0.059 0.941 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.270 0.730 30 H 0.377 0.623 31 H 0.087 0.913 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 -3.595 -1.102 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.150 4.150 3 N -0.219 5.219 4 C -0.039 4.039 5 N -0.120 5.120 6 C -0.154 4.154 7 C -0.127 4.127 8 C -0.008 4.008 9 C 0.097 3.903 10 H 0.027 0.973 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.536 5.536 15 Si 0.735 3.265 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.197 1.197 19 N -0.325 5.325 20 C 0.006 3.994 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.203 0.797 31 H 0.105 0.895 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.793 -3.052 -1.554 9.437 hybrid contribution 1.527 -0.852 0.753 1.903 sum -7.267 -3.904 -0.801 8.288 Atomic orbital electron populations 1.19896 0.88410 1.01774 1.01325 1.20454 0.95823 0.88104 1.10618 1.69769 0.99917 1.30332 1.21903 1.23331 0.94550 0.81966 1.04083 1.45468 1.06294 1.07927 1.52292 1.20750 0.84227 0.96981 1.13430 1.20100 1.01234 0.89338 1.02038 1.22450 0.80847 0.95186 1.02277 1.19316 0.91702 0.87444 0.91844 0.97298 1.20980 0.89343 1.00833 1.44324 0.91520 1.25024 0.99800 0.95017 0.93572 1.69668 1.28371 1.12124 1.43439 0.86336 0.82286 0.79677 0.78218 1.20239 1.21039 1.19727 1.61014 1.06447 1.08032 1.57012 1.20398 0.85899 0.93328 0.99759 0.92203 0.91781 0.92014 0.91551 0.90626 0.91981 0.90173 0.90669 0.92035 0.79682 0.89508 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.22 36.01 0.37 -0.42 16 2 C -0.02 -0.38 7.10 -82.65 -0.59 -0.97 16 3 N -0.50 -10.83 11.24 -6.84 -0.08 -10.91 16 4 C 0.22 4.97 7.76 -155.22 -1.20 3.77 16 5 N -0.44 -9.23 3.14 -109.12 -0.34 -9.57 16 6 C -0.04 -0.69 6.99 -81.90 -0.57 -1.27 16 7 C -0.07 -0.94 10.03 36.00 0.36 -0.57 16 8 C 0.11 2.40 6.26 -3.82 -0.02 2.37 16 9 C 0.21 4.98 2.41 -68.61 -0.17 4.81 16 10 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 11 C -0.52 -13.15 8.74 -34.44 -0.30 -13.45 16 12 H 0.07 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.07 1.76 5.24 -17.82 -0.09 1.67 16 14 N -0.90 -23.67 11.52 55.43 0.64 -23.03 16 15 Si 0.91 19.88 29.54 -169.99 -5.02 14.86 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 N -0.69 -16.24 6.57 -108.44 -0.71 -16.95 16 20 C 0.14 2.97 6.98 -4.58 -0.03 2.94 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.71 7.18 -51.93 -0.37 0.34 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.84 7.19 -51.93 -0.37 0.47 16 26 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.08 1.66 8.12 -51.92 -0.42 1.24 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.38 9.42 6.50 -39.29 -0.26 9.17 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -28.40 265.11 -8.11 -36.51 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.34 Total: 6.21 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.25 Total: -1.12 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.49 Total: -60.46 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.40 -8.11 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260860393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.149 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds