Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34370 * 125.95166 * 2 1 4 4 C 1.29891 * 109.19439 * 180.02562 * 3 2 1 5 5 N 1.35636 * 108.59438 * 359.85687 * 4 3 2 6 6 C 1.34938 * 125.95459 * 179.97438 * 2 1 3 7 7 C 1.50695 * 126.67689 * 0.07691 * 6 2 1 8 8 C 1.46525 * 123.85184 * 180.23195 * 5 4 3 9 9 C 1.53408 * 108.23938 * 16.27396 * 8 5 4 10 10 H 1.08999 * 109.44066 * 70.35921 * 9 8 5 11 11 C 1.50706 * 109.43728 * 190.28579 * 9 8 5 12 12 H 1.07995 * 120.00167 * 359.72195 * 11 9 8 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 N 1.46974 * 109.65338 * 310.33662 * 9 8 5 20 20 C 1.47331 * 111.17224 * 70.81197 * 19 9 8 21 21 H 1.08996 * 109.47296 * 270.02649 * 1 2 3 22 22 H 1.09003 * 109.46788 * 30.02559 * 1 2 3 23 23 H 1.09004 * 109.47229 * 150.02018 * 1 2 3 24 24 H 1.08998 * 109.47763 * 269.98050 * 7 6 2 25 25 H 1.08999 * 109.47001 * 29.98652 * 7 6 2 26 26 H 1.09002 * 109.46949 * 149.98014 * 7 6 2 27 27 H 1.09007 * 109.70836 * 256.58542 * 8 5 4 28 28 H 1.08996 * 109.71011 * 135.96311 * 8 5 4 29 29 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 30 30 H 1.00899 * 111.00360 * 194.88601 * 19 9 8 31 31 H 1.09003 * 109.73329 * 190.15815 * 20 19 9 32 32 H 1.08995 * 109.78000 * 69.47185 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2959 1.0877 0.0000 4 6 3.5396 0.7132 -0.0005 5 7 3.5831 -0.6424 0.0023 6 6 2.2993 -1.0923 0.0005 7 6 1.8494 -2.5305 -0.0005 8 6 4.8255 -1.4192 0.0075 9 6 5.9729 -0.4870 0.4174 10 1 5.8744 -0.2327 1.4727 11 6 7.2901 -1.1830 0.1899 12 1 7.3087 -2.1891 -0.2022 13 6 8.4714 -0.5370 0.4873 14 7 8.4486 0.6862 0.9698 15 14 10.1041 -1.3994 0.2047 16 1 10.5833 -1.1136 -1.1716 17 1 11.1013 -0.9060 1.1884 18 1 9.9260 -2.8640 0.3726 19 7 5.9233 0.7415 -0.3879 20 6 4.7750 1.5819 -0.0063 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 1.7402 -2.8779 1.0269 25 1 0.8920 -2.6114 -0.5152 26 1 2.5908 -3.1427 -0.5140 27 1 5.0140 -1.8179 -0.9893 28 1 4.7441 -2.2381 0.7222 29 1 9.2796 1.1404 1.1794 30 1 6.7880 1.2565 -0.3156 31 1 4.6538 2.3895 -0.7283 32 1 4.9368 1.9983 0.9879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260860393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = 31.212825 kcal Electronic energy + Delta-G solvation = -15192.871543 eV Core-core repulsion = 12766.883013 eV Total energy + Delta-G solvation = -2425.988530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.24449 -38.20430 -34.83844 -34.61452 -33.02133 -31.18973 -29.26130 -27.68194 -26.67081 -24.08786 -23.17010 -20.82581 -19.78410 -18.72994 -17.26527 -17.00658 -16.82719 -15.84607 -15.57158 -15.00139 -14.82155 -14.37471 -13.96934 -13.86433 -13.69546 -13.57571 -13.12881 -12.86061 -12.82191 -12.77692 -12.54801 -12.42747 -11.83726 -11.36193 -10.89296 -10.80966 -10.40356 -9.23323 -8.84859 -8.29923 -6.44459 1.11190 1.44410 1.46086 1.55770 1.95626 2.07420 2.38576 2.94949 3.34750 3.76924 3.89103 3.92307 4.24457 4.33817 4.37616 4.50970 4.51275 4.58443 4.65165 4.73708 4.94195 5.03726 5.12999 5.15915 5.20295 5.56160 5.64373 5.81096 5.98400 6.24164 6.39557 6.69324 6.84220 7.19212 7.29023 8.79582 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053564 B = 0.007625 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.615544 B = 3671.473675 C = 4109.481170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.040 4.040 3 N -0.517 5.517 4 C 0.187 3.813 5 N -0.448 5.448 6 C -0.037 4.037 7 C -0.068 4.068 8 C 0.125 3.875 9 C 0.206 3.794 10 H -0.030 1.030 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.023 3.977 14 N -0.923 5.923 15 Si 0.973 3.027 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.264 1.264 19 N -0.687 5.687 20 C 0.142 3.858 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.271 0.729 30 H 0.366 0.634 31 H 0.100 0.900 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 -5.368 -1.614 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.169 4.169 3 N -0.238 5.238 4 C -0.075 4.075 5 N -0.129 5.129 6 C -0.153 4.153 7 C -0.125 4.125 8 C 0.003 3.997 9 C 0.097 3.903 10 H -0.012 1.012 11 C -0.573 4.573 12 H 0.091 0.909 13 C -0.177 4.177 14 N -0.563 5.563 15 Si 0.798 3.202 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.189 1.189 19 N -0.325 5.325 20 C 0.011 3.989 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.118 0.882 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.851 -4.833 -2.070 11.166 hybrid contribution 1.763 -0.277 0.933 2.014 sum -8.087 -5.109 -1.137 9.633 Atomic orbital electron populations 1.20034 0.84989 1.03312 1.02645 1.21319 0.97999 0.87396 1.10178 1.69746 1.00076 1.31965 1.21983 1.23304 0.94777 0.82773 1.06658 1.45561 1.07184 1.07592 1.52609 1.21645 0.82868 0.99407 1.11365 1.20304 1.02679 0.85937 1.03586 1.22235 0.80086 0.94592 1.02775 1.19216 0.92985 0.88244 0.89814 1.01235 1.21301 0.90144 1.01309 1.44518 0.90871 1.25823 1.03078 0.95597 0.93196 1.69781 1.29148 1.13324 1.44013 0.85314 0.78054 0.78895 0.77919 1.19957 1.21057 1.18853 1.61027 1.06493 1.08239 1.56770 1.20337 0.85553 0.93542 0.99453 0.90888 0.91810 0.88941 0.89958 0.87633 0.91460 0.89792 0.88931 0.91983 0.80923 0.88244 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.30 10.22 71.24 0.73 -0.57 16 2 C -0.04 -1.43 7.10 41.41 0.29 -1.14 16 3 N -0.52 -22.28 11.24 -175.57 -1.97 -24.26 16 4 C 0.19 8.39 7.76 138.21 1.07 9.47 16 5 N -0.45 -18.55 3.14 -499.15 -1.57 -20.12 16 6 C -0.04 -1.29 6.99 41.15 0.29 -1.00 16 7 C -0.07 -1.57 10.03 71.23 0.71 -0.86 16 8 C 0.13 5.19 6.26 86.51 0.54 5.73 16 9 C 0.21 10.19 2.41 44.29 0.11 10.30 16 10 H -0.03 -1.67 8.07 -2.39 -0.02 -1.69 16 11 C -0.53 -27.35 8.74 25.60 0.22 -27.13 16 12 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 13 C 0.02 1.20 5.24 84.66 0.44 1.64 16 14 N -0.92 -49.63 11.52 21.45 0.25 -49.38 16 15 Si 0.97 40.56 29.54 68.60 2.03 42.59 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 N -0.69 -33.47 6.57 -497.00 -3.26 -36.73 16 20 C 0.14 6.36 6.98 85.57 0.60 6.96 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.71 7.18 -2.38 -0.02 1.69 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.11 1.83 7.19 -2.39 -0.02 1.82 16 26 H 0.07 1.52 8.07 -2.39 -0.02 1.50 16 27 H 0.08 3.40 8.12 -2.38 -0.02 3.38 16 28 H 0.09 3.45 8.14 -2.39 -0.02 3.44 16 29 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.37 18.96 6.50 -89.69 -0.58 18.37 16 31 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -61.47 265.11 1.01 -60.46 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.54 Total: 24.03 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.01 Total: 3.40 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.56 Total: -130.48 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -61.47 1.01 -60.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260860393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.671 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds