Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34008 * 125.98318 * 2 1 4 4 C 1.30902 * 109.30100 * 180.32142 * 3 2 1 5 5 N 1.34813 * 108.61371 * 359.61331 * 4 3 2 6 6 C 1.34561 * 125.98453 * 179.80179 * 2 1 3 7 7 C 1.50699 * 126.58509 * 0.04009 * 6 2 1 8 8 H 1.09005 * 109.46574 * 345.05069 * 7 6 2 9 9 N 1.46904 * 109.47150 * 225.05150 * 7 6 2 10 10 C 1.50698 * 109.47340 * 105.04733 * 7 6 2 11 11 H 1.08007 * 119.99845 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00024 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00121 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00199 * 179.72612 * 12 10 7 15 15 H 1.48508 * 109.47150 * 270.28128 * 14 12 10 16 16 H 1.48500 * 109.46957 * 30.27617 * 14 12 10 17 17 H 1.48499 * 109.47204 * 150.27799 * 14 12 10 18 18 C 1.47004 * 111.18344 * 180.22451 * 5 4 3 19 19 C 1.54381 * 105.53124 * 342.89573 * 18 5 4 20 20 C 1.51573 * 141.44618 * 179.53816 * 4 3 2 21 21 H 1.09000 * 109.47278 * 264.98099 * 1 2 3 22 22 H 1.08998 * 109.46874 * 24.98596 * 1 2 3 23 23 H 1.08997 * 109.46929 * 144.98447 * 1 2 3 24 24 H 1.00896 * 110.99710 * 294.96419 * 9 7 6 25 25 H 1.00896 * 110.99753 * 58.91789 * 9 7 6 26 26 H 0.96998 * 119.99471 * 359.72092 * 13 12 10 27 27 H 1.08997 * 110.23580 * 101.90669 * 18 5 4 28 28 H 1.09004 * 110.23375 * 223.87245 * 18 5 4 29 29 H 1.08999 * 110.96281 * 267.59080 * 19 18 5 30 30 H 1.09003 * 110.97053 * 143.83650 * 19 18 5 31 31 H 1.09003 * 110.47499 * 315.30949 * 20 4 3 32 32 H 1.09000 * 110.47770 * 77.79953 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0844 0.0000 4 6 3.5483 0.7086 -0.0069 5 7 3.5937 -0.6387 -0.0030 6 6 2.2976 -1.0888 0.0038 7 6 1.8462 -2.5266 0.0079 8 1 0.7899 -2.5749 0.2726 9 7 2.6325 -3.2839 0.9909 10 6 2.0484 -3.1206 -1.3622 11 1 2.4628 -2.5174 -2.1565 12 6 1.7054 -4.4343 -1.6015 13 7 1.2013 -5.1690 -0.6342 14 14 1.9489 -5.1684 -3.3020 15 1 0.7239 -4.9543 -4.1137 16 1 3.1032 -4.5099 -3.9647 17 1 2.2132 -6.6246 -3.1793 18 6 4.9816 -1.1234 -0.0050 19 6 5.8394 0.0811 -0.4484 20 6 4.9548 1.2733 -0.0191 21 1 -0.3634 -0.0899 1.0237 22 1 -0.3633 0.9315 -0.4341 23 1 -0.3633 -0.8416 -0.5897 24 1 3.6046 -3.3233 0.7233 25 1 2.5275 -2.8941 1.9155 26 1 1.0745 -4.7877 0.2486 27 1 5.2705 -1.4439 0.9959 28 1 5.0926 -1.9459 -0.7117 29 1 5.9903 0.0761 -1.5279 30 1 6.7942 0.0946 0.0774 31 1 5.0333 2.0858 -0.7414 32 1 5.2352 1.6200 0.9756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = 56.348056 kcal Electronic energy + Delta-G solvation = -15404.381279 eV Core-core repulsion = 12979.482694 eV Total energy + Delta-G solvation = -2424.898585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87512 -36.29880 -34.92859 -31.66307 -30.90295 -29.98979 -27.15360 -26.27924 -24.87348 -22.09702 -21.00752 -19.47901 -19.05058 -16.94182 -16.37272 -15.05357 -14.71586 -14.08357 -13.86225 -13.66448 -13.20783 -13.12159 -13.06134 -12.25277 -12.07700 -11.76121 -11.55694 -11.52613 -11.46820 -10.84561 -10.76763 -10.50662 -10.12562 -9.38246 -9.00458 -8.66168 -8.39232 -7.71070 -7.22355 -6.24884 -4.09383 2.71565 3.33582 3.43186 3.45114 3.61293 3.67857 4.17306 4.54353 4.62258 4.80538 4.92433 5.36399 5.46038 5.52693 5.65573 5.73127 5.76322 5.94494 5.96744 6.04017 6.07632 6.28515 6.53215 6.60099 6.84449 7.30833 7.53499 7.70250 7.89767 8.17457 8.53912 8.63141 8.78544 8.98139 9.73659 11.14453 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.010275 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.147619 B = 2724.417110 C = 3126.130192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.027 4.027 3 N -0.480 5.480 4 C 0.146 3.854 5 N -0.467 5.467 6 C 0.030 3.970 7 C 0.270 3.730 8 H 0.055 0.945 9 N -0.828 5.828 10 C -0.611 4.611 11 H 0.043 0.957 12 C 0.039 3.961 13 N -0.888 5.888 14 Si 1.066 2.934 15 H -0.288 1.288 16 H -0.293 1.293 17 H -0.285 1.285 18 C 0.103 3.897 19 C -0.128 4.128 20 C -0.031 4.031 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.322 0.678 25 H 0.302 0.698 26 H 0.291 0.709 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.026 8.388 1.776 11.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.155 4.155 3 N -0.201 5.201 4 C -0.116 4.116 5 N -0.152 5.152 6 C -0.087 4.087 7 C 0.160 3.840 8 H 0.072 0.928 9 N -0.355 5.355 10 C -0.650 4.650 11 H 0.062 0.938 12 C -0.171 4.171 13 N -0.522 5.522 14 Si 0.896 3.104 15 H -0.214 1.214 16 H -0.219 1.219 17 H -0.210 1.210 18 C -0.019 4.019 19 C -0.167 4.167 20 C -0.071 4.071 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.131 6.931 0.727 9.971 hybrid contribution 1.082 1.538 0.960 2.112 sum 8.213 8.469 1.687 11.918 Atomic orbital electron populations 1.19900 0.87950 1.02216 1.01251 1.20332 0.96008 0.87374 1.11767 1.69574 0.98713 1.31240 1.20580 1.23946 0.94956 0.82961 1.09707 1.46027 1.05571 1.08944 1.54616 1.22723 0.80325 1.00438 1.05174 1.17994 0.93762 0.79190 0.93059 0.92776 1.59458 1.14062 1.58430 1.03555 1.21669 1.50141 0.99315 0.93862 0.93825 1.25628 0.93327 0.93674 1.04482 1.70535 1.37734 1.39417 1.04528 0.83602 0.76259 0.75947 0.74642 1.21445 1.21902 1.21047 1.22246 0.78312 0.98546 1.02768 1.22699 0.98186 0.92951 1.02836 1.20473 0.85897 0.97785 1.02905 0.92546 0.92090 0.90875 0.86569 0.88752 0.89635 0.90270 0.88786 0.89720 0.88666 0.89330 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 9.89 36.01 0.36 -0.71 16 2 C -0.03 -0.60 7.09 -82.94 -0.59 -1.19 16 3 N -0.48 -10.54 11.26 -6.82 -0.08 -10.62 16 4 C 0.15 2.80 8.58 -154.86 -1.33 1.47 16 5 N -0.47 -9.22 3.61 -107.74 -0.39 -9.61 16 6 C 0.03 0.69 5.97 -81.49 -0.49 0.20 16 7 C 0.27 6.70 2.58 -70.02 -0.18 6.52 16 8 H 0.05 1.45 7.17 -51.93 -0.37 1.08 16 9 N -0.83 -18.90 7.81 -6.65 -0.05 -18.95 16 10 C -0.61 -16.91 8.67 -34.44 -0.30 -17.21 16 11 H 0.04 1.26 7.74 -52.48 -0.41 0.86 16 12 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 13 N -0.89 -26.32 13.51 55.43 0.75 -25.57 16 14 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.10 1.54 6.89 -3.04 -0.02 1.52 16 19 C -0.13 -1.41 7.17 -25.20 -0.18 -1.59 16 20 C -0.03 -0.40 6.86 -26.65 -0.18 -0.59 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.07 1.46 7.70 -51.93 -0.40 1.06 16 24 H 0.32 7.10 8.05 -39.29 -0.32 6.78 16 25 H 0.30 6.24 9.02 -39.29 -0.35 5.89 16 26 H 0.29 8.63 6.39 -40.82 -0.26 8.37 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 267.68 15.07 4.03 4.03 Total: -1.00 -32.99 267.68 -8.11 -41.10 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.29 Total: 10.16 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.01 Total: -10.57 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.23 Total: -64.74 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.99 -8.11 -41.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.447 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds