Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34008 * 125.98318 * 2 1 4 4 C 1.30902 * 109.30100 * 180.32142 * 3 2 1 5 5 N 1.34813 * 108.61371 * 359.61331 * 4 3 2 6 6 C 1.34561 * 125.98453 * 179.80179 * 2 1 3 7 7 C 1.50699 * 126.58509 * 0.04009 * 6 2 1 8 8 H 1.09005 * 109.46574 * 345.05069 * 7 6 2 9 9 N 1.46904 * 109.47150 * 225.05150 * 7 6 2 10 10 C 1.50698 * 109.47340 * 105.04733 * 7 6 2 11 11 H 1.08007 * 119.99845 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00024 * 179.97438 * 10 7 6 13 13 N 1.31519 * 120.00121 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00199 * 179.72612 * 12 10 7 15 15 H 1.48508 * 109.47150 * 270.28128 * 14 12 10 16 16 H 1.48500 * 109.46957 * 30.27617 * 14 12 10 17 17 H 1.48499 * 109.47204 * 150.27799 * 14 12 10 18 18 C 1.47004 * 111.18344 * 180.22451 * 5 4 3 19 19 C 1.54381 * 105.53124 * 342.89573 * 18 5 4 20 20 C 1.51573 * 141.44618 * 179.53816 * 4 3 2 21 21 H 1.09000 * 109.47278 * 264.98099 * 1 2 3 22 22 H 1.08998 * 109.46874 * 24.98596 * 1 2 3 23 23 H 1.08997 * 109.46929 * 144.98447 * 1 2 3 24 24 H 1.00896 * 110.99710 * 294.96419 * 9 7 6 25 25 H 1.00896 * 110.99753 * 58.91789 * 9 7 6 26 26 H 0.96998 * 119.99471 * 359.72092 * 13 12 10 27 27 H 1.08997 * 110.23580 * 101.90669 * 18 5 4 28 28 H 1.09004 * 110.23375 * 223.87245 * 18 5 4 29 29 H 1.08999 * 110.96281 * 267.59080 * 19 18 5 30 30 H 1.09003 * 110.97053 * 143.83650 * 19 18 5 31 31 H 1.09003 * 110.47499 * 315.30949 * 20 4 3 32 32 H 1.09000 * 110.47770 * 77.79953 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0844 0.0000 4 6 3.5483 0.7086 -0.0069 5 7 3.5937 -0.6387 -0.0030 6 6 2.2976 -1.0888 0.0038 7 6 1.8462 -2.5266 0.0079 8 1 0.7899 -2.5749 0.2726 9 7 2.6325 -3.2839 0.9909 10 6 2.0484 -3.1206 -1.3622 11 1 2.4628 -2.5174 -2.1565 12 6 1.7054 -4.4343 -1.6015 13 7 1.2013 -5.1690 -0.6342 14 14 1.9489 -5.1684 -3.3020 15 1 0.7239 -4.9543 -4.1137 16 1 3.1032 -4.5099 -3.9647 17 1 2.2132 -6.6246 -3.1793 18 6 4.9816 -1.1234 -0.0050 19 6 5.8394 0.0811 -0.4484 20 6 4.9548 1.2733 -0.0191 21 1 -0.3634 -0.0899 1.0237 22 1 -0.3633 0.9315 -0.4341 23 1 -0.3633 -0.8416 -0.5897 24 1 3.6046 -3.3233 0.7233 25 1 2.5275 -2.8941 1.9155 26 1 1.0745 -4.7877 0.2486 27 1 5.2705 -1.4439 0.9959 28 1 5.0926 -1.9459 -0.7117 29 1 5.9903 0.0761 -1.5279 30 1 6.7942 0.0946 0.0774 31 1 5.0333 2.0858 -0.7414 32 1 5.2352 1.6200 0.9756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = 33.314153 kcal Electronic energy + Delta-G solvation = -15405.380104 eV Core-core repulsion = 12979.482694 eV Total energy + Delta-G solvation = -2425.897410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.37599 -37.64726 -36.80556 -33.58500 -32.34742 -31.59883 -28.64866 -27.82131 -26.68973 -23.89722 -22.23216 -20.97662 -20.66356 -18.96568 -17.63282 -16.64828 -16.58115 -15.72955 -15.50157 -15.31266 -14.67751 -14.45406 -14.23252 -13.94177 -13.68409 -13.51042 -13.12875 -12.95264 -12.66529 -12.50448 -12.47364 -11.96232 -11.86476 -11.03112 -10.90674 -10.54748 -10.29519 -9.56818 -8.89209 -8.45081 -6.33130 1.14414 1.51811 1.58992 1.76915 1.94872 2.07795 2.57865 2.95576 3.24079 3.52919 3.77064 3.89557 4.06026 4.21554 4.33497 4.41888 4.50430 4.55252 4.74542 4.77501 4.80444 4.93454 5.03484 5.09376 5.15708 5.58744 5.77010 5.96541 6.09431 6.27849 6.51533 6.66697 6.89128 7.19763 7.56798 8.90483 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.010275 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.147619 B = 2724.417110 C = 3126.130192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.043 4.043 3 N -0.516 5.516 4 C 0.153 3.847 5 N -0.473 5.473 6 C -0.007 4.007 7 C 0.280 3.720 8 H 0.025 0.975 9 N -0.829 5.829 10 C -0.615 4.615 11 H 0.024 0.976 12 C -0.005 4.005 13 N -0.912 5.912 14 Si 1.111 2.889 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.089 3.911 19 C -0.109 4.109 20 C -0.029 4.029 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.328 0.672 25 H 0.315 0.685 26 H 0.280 0.720 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 9.431 1.538 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.171 4.171 3 N -0.237 5.237 4 C -0.110 4.110 5 N -0.157 5.157 6 C -0.124 4.124 7 C 0.170 3.830 8 H 0.043 0.957 9 N -0.357 5.357 10 C -0.654 4.654 11 H 0.043 0.957 12 C -0.210 4.210 13 N -0.547 5.547 14 Si 0.935 3.065 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.032 4.032 19 C -0.147 4.147 20 C -0.068 4.068 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.076 0.924 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.125 0.875 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.398 7.977 0.500 12.337 hybrid contribution 0.434 1.301 1.083 1.747 sum 9.832 9.278 1.583 13.611 Atomic orbital electron populations 1.19899 0.86952 1.02178 1.01952 1.20798 0.97240 0.87787 1.11310 1.69590 1.00151 1.31187 1.22787 1.25288 0.96401 0.83292 1.06028 1.46319 1.06081 1.09485 1.53837 1.22335 0.82404 0.99359 1.08344 1.17532 0.92554 0.80857 0.92083 0.95678 1.59233 1.14127 1.58456 1.03888 1.21831 1.49493 0.99259 0.94833 0.95715 1.26925 0.92507 0.94397 1.07138 1.70650 1.39710 1.39754 1.04565 0.83005 0.76982 0.75472 0.71073 1.20390 1.20522 1.20627 1.22688 0.76653 1.00137 1.03723 1.22788 0.98808 0.89434 1.03676 1.20842 0.81967 0.98774 1.05255 0.91181 0.90728 0.92431 0.86010 0.87353 0.90836 0.88352 0.90478 0.89382 0.83998 0.87453 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.06 9.89 71.24 0.70 -1.36 16 2 C -0.04 -1.98 7.09 41.38 0.29 -1.69 16 3 N -0.52 -22.38 11.26 -175.48 -1.98 -24.36 16 4 C 0.15 5.59 8.58 138.36 1.19 6.78 16 5 N -0.47 -18.26 3.61 -494.78 -1.79 -20.04 16 6 C -0.01 -0.34 5.97 40.88 0.24 -0.10 16 7 C 0.28 14.34 2.58 43.42 0.11 14.45 16 8 H 0.03 1.42 7.17 -2.38 -0.02 1.41 16 9 N -0.83 -38.44 7.81 -174.95 -1.37 -39.81 16 10 C -0.62 -34.81 8.67 25.60 0.22 -34.59 16 11 H 0.02 1.46 7.74 -2.91 -0.02 1.43 16 12 C -0.01 -0.29 5.39 84.65 0.46 0.17 16 13 N -0.91 -54.90 13.51 21.45 0.29 -54.61 16 14 Si 1.11 50.64 29.90 68.60 2.05 52.69 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 C 0.09 2.45 6.89 86.75 0.60 3.04 16 19 C -0.11 -1.91 7.17 31.58 0.23 -1.69 16 20 C -0.03 -0.64 6.86 30.65 0.21 -0.43 16 21 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 22 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 23 H 0.06 2.41 7.70 -2.39 -0.02 2.39 16 24 H 0.33 14.49 8.05 -89.70 -0.72 13.76 16 25 H 0.32 13.17 9.02 -89.70 -0.81 12.36 16 26 H 0.28 17.06 6.39 -92.71 -0.59 16.47 16 27 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.38 8.14 -2.38 -0.02 2.37 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.16 267.68 1.25 -71.91 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.22 Total: 29.63 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.25 Total: -15.41 kcal Atomic # 7 Polarization: -133.98 SS G_CDS: -4.84 Total: -138.82 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -73.16 1.25 -71.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.224 kcal (2) G-P(sol) polarization free energy of solvation -73.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds