Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09001 * 110.83988 * 2 1 4 4 C 1.54452 * 110.94173 * 123.68914 * 2 1 3 5 5 C 1.51326 * 104.98414 * 92.43683 * 4 2 1 6 6 N 1.35217 * 141.94768 * 196.92896 * 5 4 2 7 7 H 0.96999 * 126.03171 * 359.97438 * 6 5 4 8 8 N 1.40001 * 107.93694 * 180.02562 * 6 5 4 9 9 C 1.30739 * 108.21632 * 0.02562 * 8 6 5 10 10 C 1.35137 * 110.30476 * 16.94967 * 5 4 2 11 11 C 1.51365 * 110.24802 * 359.97438 * 10 5 4 12 12 C 1.50692 * 110.33922 * 101.94377 * 11 10 5 13 13 H 1.08010 * 119.99729 * 4.33194 * 12 11 10 14 14 C 1.37879 * 120.00632 * 184.33432 * 12 11 10 15 15 N 1.31511 * 119.99455 * 4.84601 * 14 12 11 16 16 Si 1.86789 * 120.00407 * 184.57129 * 14 12 11 17 17 H 1.48503 * 109.47144 * 180.27411 * 16 14 12 18 18 H 1.48505 * 109.47293 * 300.27240 * 16 14 12 19 19 H 1.48503 * 109.47375 * 60.27514 * 16 14 12 20 20 C 1.53002 * 110.33030 * 224.07828 * 11 10 5 21 21 N 1.46900 * 109.47087 * 293.01158 * 20 11 10 22 22 H 1.09003 * 109.46329 * 183.69844 * 1 2 3 23 23 H 1.08998 * 109.47250 * 303.69662 * 1 2 3 24 24 H 1.08990 * 109.46942 * 63.69778 * 1 2 3 25 25 H 1.08999 * 110.31778 * 333.57320 * 4 2 1 26 26 H 1.08994 * 110.45184 * 211.36810 * 4 2 1 27 27 H 1.07991 * 125.88319 * 179.97438 * 9 8 6 28 28 H 0.96999 * 120.00349 * 354.61428 * 15 14 12 29 29 H 1.08992 * 109.47449 * 53.01424 * 20 11 10 30 30 H 1.09011 * 109.46780 * 173.01682 * 20 11 10 31 31 H 1.00899 * 111.00196 * 184.85072 * 21 20 11 32 32 H 1.00899 * 111.00000 * 308.80156 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 6 2.0821 -0.8001 1.2002 5 6 2.2800 -2.2057 0.6757 6 7 2.4599 -3.4807 1.0884 7 1 2.5031 -3.7816 2.0095 8 7 2.5741 -4.2898 -0.0484 9 6 2.4671 -3.5274 -1.1051 10 6 2.2800 -2.2063 -0.6757 11 6 2.0813 -0.8003 -1.2001 12 6 3.3955 -0.2208 -1.6560 13 1 4.2874 -0.8298 -1.6442 14 6 3.4595 1.0870 -2.0882 15 7 2.3960 1.8569 -2.0133 16 14 5.0587 1.7672 -2.7729 17 1 4.8672 3.1884 -3.1586 18 1 6.1197 1.6739 -1.7380 19 1 5.4607 0.9803 -3.9664 20 6 1.0732 -0.7998 -2.3510 21 7 1.6439 -1.5120 -3.5022 22 1 -0.3632 -1.0256 0.0663 23 1 -0.3634 0.5701 0.8550 24 1 -0.3633 0.4553 -0.9212 25 1 1.3625 -0.7992 2.0189 26 1 3.0326 -0.3822 1.5317 27 1 2.5143 -3.8585 -2.1319 28 1 1.5469 1.4849 -1.7278 29 1 0.1579 -1.2985 -2.0326 30 1 0.8470 0.2280 -2.6354 31 1 1.0303 -1.4577 -4.3013 32 1 2.5621 -1.1591 -3.7267 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = 82.084502 kcal Electronic energy + Delta-G solvation = -15929.889012 eV Core-core repulsion = 13506.106443 eV Total energy + Delta-G solvation = -2423.782569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85346 -37.35782 -33.26056 -31.86801 -30.58148 -29.42336 -27.11879 -25.50659 -23.87029 -21.77639 -20.79271 -19.20022 -18.35694 -17.35341 -15.74618 -14.45252 -14.27428 -14.06841 -13.77580 -13.38078 -13.03921 -12.62337 -12.51068 -12.05386 -11.73789 -11.09017 -11.02672 -10.82171 -10.78814 -10.46838 -10.15175 -10.05628 -9.64631 -9.38451 -8.74159 -8.67096 -8.29024 -7.60657 -7.22024 -6.25833 -4.08140 2.65801 3.41276 3.42412 3.42918 3.61238 3.79372 4.50439 5.21137 5.37168 5.55798 5.73111 5.83255 5.91334 6.08147 6.17961 6.24574 6.40480 6.50765 6.58120 6.66374 6.77839 6.89180 7.06296 7.10562 7.33026 7.45068 7.68392 8.05622 8.23101 8.34361 8.44404 8.48884 8.62350 8.88389 9.59251 11.00325 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.012279 C = 0.011682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.769599 B = 2279.763772 C = 2396.244828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.100 0.900 4 C -0.025 4.025 5 C 0.022 3.978 6 N -0.479 5.479 7 H 0.424 0.576 8 N -0.319 5.319 9 C 0.077 3.923 10 C -0.175 4.175 11 C 0.134 3.866 12 C -0.567 4.567 13 H 0.049 0.951 14 C 0.022 3.978 15 N -0.918 5.918 16 Si 1.060 2.940 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.288 1.288 20 C 0.074 3.926 21 N -0.843 5.843 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.178 0.822 28 H 0.279 0.721 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.313 0.687 32 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -3.363 3.265 5.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.118 0.882 4 C -0.064 4.064 5 C -0.105 4.105 6 N -0.187 5.187 7 H 0.265 0.735 8 N -0.142 5.142 9 C -0.108 4.108 10 C -0.186 4.186 11 C 0.132 3.868 12 C -0.606 4.606 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.556 5.556 16 Si 0.889 3.111 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.058 4.058 21 N -0.372 5.372 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.195 0.805 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.277 -3.806 3.543 5.354 hybrid contribution -0.694 0.067 0.341 0.776 sum -1.970 -3.738 3.884 5.739 Atomic orbital electron populations 1.21836 0.96799 1.00268 1.00759 1.22224 0.93320 1.01119 0.94611 0.88188 1.20688 1.00737 0.86771 0.98213 1.21943 1.03311 0.87993 0.97280 1.45499 1.61537 1.03862 1.07781 0.73471 1.77195 1.27508 1.18000 0.91456 1.23317 0.98452 0.91419 0.97594 1.21114 1.09095 0.95859 0.92485 1.17380 0.94331 0.85441 0.89658 1.21800 0.93858 0.99170 1.45744 0.93217 1.25667 1.03817 0.93521 0.95206 1.70836 1.01659 1.38034 1.45114 0.83653 0.74745 0.76154 0.76525 1.21031 1.21649 1.21455 1.21916 0.96263 0.94737 0.92835 1.58808 1.07571 1.63038 1.07800 0.93727 0.94111 0.92463 0.92595 0.90473 0.80546 0.90663 0.94451 0.95304 0.87792 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.88 37.16 0.29 -2.29 16 2 C -0.09 -1.95 2.05 -89.11 -0.18 -2.14 16 3 H 0.10 2.37 5.94 -51.93 -0.31 2.06 16 4 C -0.02 -0.47 6.33 -26.81 -0.17 -0.64 16 5 C 0.02 0.44 8.07 -81.90 -0.66 -0.22 16 6 N -0.48 -8.82 7.37 33.65 0.25 -8.58 16 7 H 0.42 6.15 8.96 -182.67 -1.64 4.51 16 8 N -0.32 -6.49 12.69 30.67 0.39 -6.10 16 9 C 0.08 1.64 11.99 -17.29 -0.21 1.43 16 10 C -0.17 -3.86 5.29 -104.67 -0.55 -4.42 16 11 C 0.13 3.04 0.25 -155.74 -0.04 3.00 16 12 C -0.57 -14.42 6.63 -34.44 -0.23 -14.65 16 13 H 0.05 1.35 7.77 -52.48 -0.41 0.94 16 14 C 0.02 0.56 5.01 -17.82 -0.09 0.47 16 15 N -0.92 -24.61 12.29 55.43 0.68 -23.93 16 16 Si 1.06 23.68 29.91 -169.99 -5.08 18.60 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.07 1.61 4.24 -3.82 -0.02 1.60 16 21 N -0.84 -17.14 9.40 -10.37 -0.10 -17.24 16 22 H 0.04 0.81 7.87 -51.93 -0.41 0.40 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.08 6.46 -51.93 -0.34 0.75 16 25 H 0.06 0.90 7.91 -51.93 -0.41 0.49 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.18 3.51 8.06 -52.49 -0.42 3.09 16 28 H 0.28 7.25 3.70 -40.82 -0.15 7.10 16 29 H 0.04 0.80 6.91 -51.93 -0.36 0.44 16 30 H 0.03 0.68 5.40 -51.92 -0.28 0.40 16 31 H 0.31 5.58 9.08 -39.29 -0.36 5.23 16 32 H 0.35 7.65 7.60 -39.29 -0.30 7.35 16 LS Contribution 252.67 15.07 3.81 3.81 Total: -1.00 -28.16 252.67 -6.93 -35.09 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -1.85 Total: -17.85 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 1.22 Total: -55.84 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.08 Total: 18.60 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.16 -6.93 -35.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.172 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds