Wall clock time and date at job start Mon Mar 30 2020 03:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09001 * 110.83988 * 2 1 4 4 C 1.54452 * 110.94173 * 123.68914 * 2 1 3 5 5 C 1.51326 * 104.98414 * 92.43683 * 4 2 1 6 6 N 1.35217 * 141.94768 * 196.92896 * 5 4 2 7 7 H 0.96999 * 126.03171 * 359.97438 * 6 5 4 8 8 N 1.40001 * 107.93694 * 180.02562 * 6 5 4 9 9 C 1.30739 * 108.21632 * 0.02562 * 8 6 5 10 10 C 1.35137 * 110.30476 * 16.94967 * 5 4 2 11 11 C 1.51365 * 110.24802 * 359.97438 * 10 5 4 12 12 C 1.50692 * 110.33922 * 101.94377 * 11 10 5 13 13 H 1.08010 * 119.99729 * 4.33194 * 12 11 10 14 14 C 1.37879 * 120.00632 * 184.33432 * 12 11 10 15 15 N 1.31511 * 119.99455 * 4.84601 * 14 12 11 16 16 Si 1.86789 * 120.00407 * 184.57129 * 14 12 11 17 17 H 1.48503 * 109.47144 * 180.27411 * 16 14 12 18 18 H 1.48505 * 109.47293 * 300.27240 * 16 14 12 19 19 H 1.48503 * 109.47375 * 60.27514 * 16 14 12 20 20 C 1.53002 * 110.33030 * 224.07828 * 11 10 5 21 21 N 1.46900 * 109.47087 * 293.01158 * 20 11 10 22 22 H 1.09003 * 109.46329 * 183.69844 * 1 2 3 23 23 H 1.08998 * 109.47250 * 303.69662 * 1 2 3 24 24 H 1.08990 * 109.46942 * 63.69778 * 1 2 3 25 25 H 1.08999 * 110.31778 * 333.57320 * 4 2 1 26 26 H 1.08994 * 110.45184 * 211.36810 * 4 2 1 27 27 H 1.07991 * 125.88319 * 179.97438 * 9 8 6 28 28 H 0.96999 * 120.00349 * 354.61428 * 15 14 12 29 29 H 1.08992 * 109.47449 * 53.01424 * 20 11 10 30 30 H 1.09011 * 109.46780 * 173.01682 * 20 11 10 31 31 H 1.00899 * 111.00196 * 184.85072 * 21 20 11 32 32 H 1.00899 * 111.00000 * 308.80156 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9179 1.0187 0.0000 4 6 2.0821 -0.8001 1.2002 5 6 2.2800 -2.2057 0.6757 6 7 2.4599 -3.4807 1.0884 7 1 2.5031 -3.7816 2.0095 8 7 2.5741 -4.2898 -0.0484 9 6 2.4671 -3.5274 -1.1051 10 6 2.2800 -2.2063 -0.6757 11 6 2.0813 -0.8003 -1.2001 12 6 3.3955 -0.2208 -1.6560 13 1 4.2874 -0.8298 -1.6442 14 6 3.4595 1.0870 -2.0882 15 7 2.3960 1.8569 -2.0133 16 14 5.0587 1.7672 -2.7729 17 1 4.8672 3.1884 -3.1586 18 1 6.1197 1.6739 -1.7380 19 1 5.4607 0.9803 -3.9664 20 6 1.0732 -0.7998 -2.3510 21 7 1.6439 -1.5120 -3.5022 22 1 -0.3632 -1.0256 0.0663 23 1 -0.3634 0.5701 0.8550 24 1 -0.3633 0.4553 -0.9212 25 1 1.3625 -0.7992 2.0189 26 1 3.0326 -0.3822 1.5317 27 1 2.5143 -3.8585 -2.1319 28 1 1.5469 1.4849 -1.7278 29 1 0.1579 -1.2985 -2.0326 30 1 0.8470 0.2280 -2.6354 31 1 1.0303 -1.4577 -4.3013 32 1 2.5621 -1.1591 -3.7267 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:04 Heat of formation + Delta-G solvation = 62.755093 kcal Electronic energy + Delta-G solvation = -15930.727198 eV Core-core repulsion = 13506.106443 eV Total energy + Delta-G solvation = -2424.620755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.45896 -39.03623 -34.94620 -33.73554 -32.17229 -30.99982 -28.80515 -27.20101 -25.66314 -23.47676 -22.38473 -20.81528 -20.11874 -19.08161 -17.43646 -16.08266 -15.90459 -15.76473 -15.59739 -14.96661 -14.63732 -14.34308 -14.05738 -13.86719 -13.40654 -12.76145 -12.64158 -12.56919 -12.36941 -12.10246 -11.93486 -11.74706 -11.31778 -11.04636 -10.57865 -10.25301 -10.19531 -9.32316 -8.88626 -8.24537 -6.09012 1.06808 1.60715 1.63707 1.83564 1.94774 2.12848 2.66551 3.32474 3.76969 3.95849 4.13933 4.26009 4.33118 4.56101 4.61582 4.71022 4.80615 4.93354 4.96283 5.06901 5.11692 5.23809 5.43555 5.49461 5.66405 5.77894 5.99235 6.34288 6.42119 6.61946 6.64683 6.87784 6.91247 7.00993 7.62711 9.01706 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.012279 C = 0.011682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.769599 B = 2279.763772 C = 2396.244828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.020 4.020 5 C 0.030 3.970 6 N -0.462 5.462 7 H 0.443 0.557 8 N -0.323 5.323 9 C 0.066 3.934 10 C -0.207 4.207 11 C 0.127 3.873 12 C -0.568 4.568 13 H 0.026 0.974 14 C -0.011 4.011 15 N -0.939 5.939 16 Si 1.095 2.905 17 H -0.290 1.290 18 H -0.285 1.285 19 H -0.277 1.277 20 C 0.084 3.916 21 N -0.838 5.838 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.182 0.818 28 H 0.278 0.722 29 H 0.042 0.958 30 H 0.007 0.993 31 H 0.327 0.673 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -3.942 4.203 6.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.059 4.059 5 C -0.099 4.099 6 N -0.172 5.172 7 H 0.288 0.712 8 N -0.146 5.146 9 C -0.118 4.118 10 C -0.218 4.218 11 C 0.125 3.875 12 C -0.607 4.607 13 H 0.044 0.956 14 C -0.211 4.211 15 N -0.579 5.579 16 Si 0.921 3.079 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.047 4.047 21 N -0.367 5.367 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.199 0.801 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.138 0.862 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.544 -4.421 4.497 6.493 hybrid contribution -0.618 0.203 0.070 0.654 sum -2.162 -4.217 4.567 6.582 Atomic orbital electron populations 1.21733 0.94818 1.00807 1.01368 1.22097 0.94983 0.99476 0.94879 0.91065 1.20663 1.01520 0.85444 0.98292 1.22091 1.02143 0.88800 0.96833 1.45492 1.60145 1.03089 1.08482 0.71187 1.77157 1.27532 1.18198 0.91754 1.23434 0.98882 0.91326 0.98191 1.21192 1.11166 0.95825 0.93622 1.17383 0.93302 0.86237 0.90546 1.21881 0.94296 0.98894 1.45604 0.95584 1.26502 1.05316 0.94036 0.95287 1.70882 1.02107 1.38468 1.46469 0.83167 0.72681 0.75417 0.76601 1.21627 1.21076 1.20258 1.21769 0.96320 0.93561 0.93065 1.58766 1.07322 1.62382 1.08224 0.93306 0.91641 0.93547 0.89052 0.90700 0.80091 0.90829 0.93925 0.97454 0.86194 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.88 71.99 0.57 -4.01 16 2 C -0.09 -3.87 2.05 -9.81 -0.02 -3.89 16 3 H 0.07 3.37 5.94 -2.39 -0.01 3.35 16 4 C -0.02 -0.71 6.33 30.54 0.19 -0.51 16 5 C 0.03 1.14 8.07 41.52 0.34 1.48 16 6 N -0.46 -15.81 7.37 -47.46 -0.35 -16.15 16 7 H 0.44 11.42 8.96 -213.39 -1.91 9.51 16 8 N -0.32 -12.53 12.69 -56.88 -0.72 -13.25 16 9 C 0.07 2.73 11.99 85.33 1.02 3.75 16 10 C -0.21 -8.92 5.29 -19.90 -0.11 -9.02 16 11 C 0.13 5.72 0.25 -52.98 -0.01 5.71 16 12 C -0.57 -29.00 6.63 25.60 0.17 -28.83 16 13 H 0.03 1.42 7.77 -2.91 -0.02 1.40 16 14 C -0.01 -0.58 5.01 84.66 0.42 -0.16 16 15 N -0.94 -50.71 12.29 21.45 0.26 -50.44 16 16 Si 1.10 47.84 29.91 68.60 2.05 49.89 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 20 C 0.08 3.67 4.24 86.30 0.37 4.03 16 21 N -0.84 -33.75 9.40 -186.71 -1.75 -35.50 16 22 H 0.05 1.66 7.87 -2.39 -0.02 1.64 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.71 6.46 -2.39 -0.02 1.70 16 25 H 0.09 2.60 7.91 -2.39 -0.02 2.59 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.18 7.08 8.06 -2.92 -0.02 7.06 16 28 H 0.28 14.59 3.70 -92.71 -0.34 14.25 16 29 H 0.04 1.79 6.91 -2.39 -0.02 1.77 16 30 H 0.01 0.35 5.40 -2.38 -0.01 0.34 16 31 H 0.33 11.46 9.08 -89.69 -0.81 10.64 16 32 H 0.34 14.93 7.60 -89.69 -0.68 14.25 16 Total: -1.00 -58.73 252.67 0.62 -58.11 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -1.81 Total: 38.81 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 2.94 Total: -31.45 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -2.56 Total: -115.36 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.05 Total: 49.89 kcal Total: -58.73 0.62 -58.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.866 kcal (2) G-P(sol) polarization free energy of solvation -58.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds