Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47134 * 2 1 4 4 N 1.33481 * 125.49414 * 90.00064 * 3 2 1 5 5 C 1.30326 * 109.72400 * 180.02562 * 4 3 2 6 6 N 1.34675 * 108.04476 * 359.92193 * 5 4 3 7 7 N 1.30968 * 125.50261 * 270.02393 * 3 2 1 8 8 C 1.46295 * 125.04868 * 180.14757 * 6 5 4 9 9 C 1.53309 * 108.77167 * 17.02253 * 8 6 5 10 10 C 1.53161 * 109.47929 * 309.85260 * 9 8 6 11 11 C 1.50931 * 127.90341 * 179.91700 * 5 4 3 12 12 H 1.08994 * 109.75214 * 76.22923 * 11 5 4 13 13 C 1.50699 * 109.71571 * 315.59755 * 11 5 4 14 14 H 1.08001 * 120.00089 * 241.25047 * 13 11 5 15 15 C 1.37870 * 119.99683 * 61.25975 * 13 11 5 16 16 N 1.31516 * 120.00661 * 359.97438 * 15 13 11 17 17 Si 1.86811 * 119.99892 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46784 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47194 * 119.99728 * 17 15 13 20 20 H 1.48496 * 109.47009 * 239.99712 * 17 15 13 21 21 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47733 * 299.99675 * 1 2 3 23 23 H 1.09003 * 109.47535 * 60.00128 * 1 2 3 24 24 H 1.08994 * 109.47244 * 240.00400 * 2 1 3 25 25 H 1.08998 * 109.47064 * 119.99829 * 2 1 3 26 26 H 1.08997 * 109.59225 * 257.23330 * 8 6 5 27 27 H 1.09004 * 109.58872 * 136.80113 * 8 6 5 28 28 H 1.09002 * 109.47130 * 189.85071 * 9 8 6 29 29 H 1.09001 * 109.46621 * 69.85405 * 9 8 6 30 30 H 1.09002 * 109.50899 * 189.11827 * 10 9 8 31 31 H 1.08998 * 109.50938 * 309.21252 * 10 9 8 32 32 H 0.96992 * 120.00390 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2906 2.1515 1.0868 5 6 2.7082 3.3342 0.7326 6 7 2.7273 3.3841 -0.6131 7 7 2.2854 2.1381 -1.0662 8 6 3.1401 4.5428 -1.4051 9 6 3.9304 5.4995 -0.5047 10 6 3.1400 5.7611 0.7808 11 6 3.1117 4.4813 1.6267 12 1 4.1014 4.2935 2.0427 13 6 2.1109 4.6319 2.7433 14 1 1.5482 5.5482 2.8441 15 6 1.9139 3.6000 3.6362 16 7 2.5989 2.4841 3.5132 17 14 0.6739 3.7870 5.0208 18 1 0.0403 5.1276 4.9401 19 1 -0.3693 2.7376 4.8961 20 1 1.3655 3.6446 6.3272 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 2.2587 5.0521 -1.7946 27 1 3.7704 4.2147 -2.2317 28 1 4.0930 6.4411 -1.0292 29 1 4.8924 5.0518 -0.2550 30 1 3.6189 6.5605 1.3463 31 1 2.1209 6.0539 0.5283 32 1 2.4600 1.7581 4.1412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = 79.887679 kcal Electronic energy + Delta-G solvation = -15501.685220 eV Core-core repulsion = 13077.807390 eV Total energy + Delta-G solvation = -2423.877830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00312 -36.32982 -33.45382 -32.88143 -30.95783 -28.83107 -28.60636 -25.14883 -23.57425 -21.98824 -21.61412 -19.17274 -18.32402 -16.50912 -15.42023 -15.18124 -14.43915 -14.11854 -13.87443 -13.43566 -13.24831 -12.79209 -12.43772 -11.96467 -11.60001 -11.18403 -11.11037 -10.99533 -10.87013 -10.58156 -10.50607 -10.40521 -10.00456 -9.63431 -9.24212 -8.59063 -8.34696 -8.03734 -7.95754 -5.84798 -3.98158 2.84446 3.34569 3.39817 3.44488 3.46633 4.32791 4.53474 5.04253 5.18383 5.27193 5.41491 5.48623 5.57182 5.81262 5.86463 5.89318 5.99529 6.10796 6.17717 6.26217 6.34084 6.50023 6.57563 6.68617 6.82180 6.97424 7.46755 7.60152 7.73857 7.92969 8.09775 8.34158 8.97352 9.64751 9.68356 11.16388 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.014856 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.238652 B = 1884.331436 C = 3008.270581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C 0.189 3.811 4 N -0.461 5.461 5 C 0.321 3.679 6 N -0.410 5.410 7 N -0.364 5.364 8 C 0.138 3.862 9 C -0.136 4.136 10 C -0.116 4.116 11 C 0.120 3.880 12 H 0.055 0.945 13 C -0.546 4.546 14 H 0.061 0.939 15 C 0.079 3.921 16 N -0.812 5.812 17 Si 0.886 3.114 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 1.258 -6.593 6.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 C -0.093 4.093 4 N -0.185 5.185 5 C 0.046 3.954 6 N -0.202 5.202 7 N -0.193 5.193 8 C 0.015 3.985 9 C -0.175 4.175 10 C -0.154 4.154 11 C 0.099 3.901 12 H 0.073 0.927 13 C -0.584 4.584 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.443 5.443 17 Si 0.714 3.286 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.211 1.211 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.549 0.720 -6.972 7.031 hybrid contribution -0.692 0.210 0.586 0.931 sum -0.143 0.931 -6.386 6.455 Atomic orbital electron populations 1.21658 0.94848 1.01047 1.02299 1.19621 0.95572 0.88072 1.02557 1.24463 0.99401 0.97943 0.87536 1.71013 1.19403 1.02361 1.25748 1.26202 0.92402 0.95609 0.81218 1.50604 1.52289 1.10422 1.06882 1.77544 1.26188 0.92406 1.23194 1.21502 0.98855 0.84121 0.94034 1.22007 0.99521 0.98370 0.97577 1.21784 0.99430 0.99830 0.94379 1.17686 0.98716 0.83424 0.90258 0.92694 1.20678 1.24919 1.01943 1.10829 0.92115 1.24929 0.95803 0.95025 0.97299 1.70067 1.37904 1.03258 1.33056 0.86650 0.81679 0.78001 0.82283 1.19980 1.21109 1.21104 0.92562 0.92109 0.93088 0.91140 0.89810 0.91201 0.90594 0.90364 0.91246 0.91204 0.92243 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.15 0.37 -1.98 16 2 C -0.02 -0.34 6.56 -27.89 -0.18 -0.52 16 3 C 0.19 4.49 7.40 -156.43 -1.16 3.33 16 4 N -0.46 -12.41 8.30 -8.03 -0.07 -12.48 16 5 C 0.32 8.18 6.88 -155.78 -1.07 7.11 16 6 N -0.41 -9.29 4.04 -58.29 -0.24 -9.53 16 7 N -0.36 -8.54 12.74 32.51 0.41 -8.13 16 8 C 0.14 2.37 7.30 -3.99 -0.03 2.34 16 9 C -0.14 -2.11 5.95 -26.49 -0.16 -2.27 16 10 C -0.12 -2.19 5.24 -26.42 -0.14 -2.33 16 11 C 0.12 2.93 2.49 -92.58 -0.23 2.70 16 12 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.55 -14.70 8.53 -34.44 -0.29 -15.00 16 14 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 15 C 0.08 2.19 5.12 -17.82 -0.09 2.10 16 16 N -0.81 -23.18 10.66 55.43 0.59 -22.59 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 265.63 15.07 4.00 4.00 Total: -1.00 -31.65 265.63 -7.91 -39.56 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.61 Total: -2.62 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.99 Total: -4.52 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.70 Total: -52.73 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.65 -7.91 -39.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.451 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds