Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47134 * 2 1 4 4 N 1.33481 * 125.49414 * 90.00064 * 3 2 1 5 5 C 1.30326 * 109.72400 * 180.02562 * 4 3 2 6 6 N 1.34675 * 108.04476 * 359.92193 * 5 4 3 7 7 N 1.30968 * 125.50261 * 270.02393 * 3 2 1 8 8 C 1.46295 * 125.04868 * 180.14757 * 6 5 4 9 9 C 1.53309 * 108.77167 * 17.02253 * 8 6 5 10 10 C 1.53161 * 109.47929 * 309.85260 * 9 8 6 11 11 C 1.50931 * 127.90341 * 179.91700 * 5 4 3 12 12 H 1.08994 * 109.75214 * 76.22923 * 11 5 4 13 13 C 1.50699 * 109.71571 * 315.59755 * 11 5 4 14 14 H 1.08001 * 120.00089 * 241.25047 * 13 11 5 15 15 C 1.37870 * 119.99683 * 61.25975 * 13 11 5 16 16 N 1.31516 * 120.00661 * 359.97438 * 15 13 11 17 17 Si 1.86811 * 119.99892 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46784 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47194 * 119.99728 * 17 15 13 20 20 H 1.48496 * 109.47009 * 239.99712 * 17 15 13 21 21 H 1.09003 * 109.47035 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47733 * 299.99675 * 1 2 3 23 23 H 1.09003 * 109.47535 * 60.00128 * 1 2 3 24 24 H 1.08994 * 109.47244 * 240.00400 * 2 1 3 25 25 H 1.08998 * 109.47064 * 119.99829 * 2 1 3 26 26 H 1.08997 * 109.59225 * 257.23330 * 8 6 5 27 27 H 1.09004 * 109.58872 * 136.80113 * 8 6 5 28 28 H 1.09002 * 109.47130 * 189.85071 * 9 8 6 29 29 H 1.09001 * 109.46621 * 69.85405 * 9 8 6 30 30 H 1.09002 * 109.50899 * 189.11827 * 10 9 8 31 31 H 1.08998 * 109.50938 * 309.21252 * 10 9 8 32 32 H 0.96992 * 120.00390 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2906 2.1515 1.0868 5 6 2.7082 3.3342 0.7326 6 7 2.7273 3.3841 -0.6131 7 7 2.2854 2.1381 -1.0662 8 6 3.1401 4.5428 -1.4051 9 6 3.9304 5.4995 -0.5047 10 6 3.1400 5.7611 0.7808 11 6 3.1117 4.4813 1.6267 12 1 4.1014 4.2935 2.0427 13 6 2.1109 4.6319 2.7433 14 1 1.5482 5.5482 2.8441 15 6 1.9139 3.6000 3.6362 16 7 2.5989 2.4841 3.5132 17 14 0.6739 3.7870 5.0208 18 1 0.0403 5.1276 4.9401 19 1 -0.3693 2.7376 4.8961 20 1 1.3655 3.6446 6.3272 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 2.2587 5.0521 -1.7946 27 1 3.7704 4.2147 -2.2317 28 1 4.0930 6.4411 -1.0292 29 1 4.8924 5.0518 -0.2550 30 1 3.6189 6.5605 1.3463 31 1 2.1209 6.0539 0.5283 32 1 2.4600 1.7581 4.1412 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = 61.074902 kcal Electronic energy + Delta-G solvation = -15502.501003 eV Core-core repulsion = 13077.807390 eV Total energy + Delta-G solvation = -2424.693614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.78358 -37.90821 -35.32608 -34.37500 -32.85093 -30.52803 -30.29409 -26.95937 -25.13408 -23.73986 -23.19447 -20.88016 -19.97155 -18.49628 -17.11797 -16.84949 -16.38491 -15.65578 -15.44767 -14.93751 -14.77729 -14.57469 -13.94298 -13.51492 -13.30055 -12.88657 -12.82243 -12.72985 -12.42277 -12.31541 -12.00611 -11.95460 -11.63342 -11.49366 -11.06793 -10.57661 -10.12687 -9.97899 -9.77869 -7.92191 -6.10507 1.03186 1.43460 1.46358 1.55216 1.79805 2.43931 2.57521 3.34267 3.56366 3.67370 3.95953 4.09177 4.19534 4.31431 4.44525 4.48041 4.59837 4.68585 4.73338 4.87454 4.95899 5.04444 5.12550 5.27532 5.29753 5.35783 5.60635 5.82721 5.90250 5.97984 6.18515 6.44618 6.91653 7.56428 7.84243 9.08035 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.014856 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.238652 B = 1884.331436 C = 3008.270581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.019 4.019 3 C 0.173 3.827 4 N -0.505 5.505 5 C 0.298 3.702 6 N -0.407 5.407 7 N -0.370 5.370 8 C 0.124 3.876 9 C -0.124 4.124 10 C -0.109 4.109 11 C 0.113 3.887 12 H 0.028 0.972 13 C -0.561 4.561 14 H 0.059 0.941 15 C 0.034 3.966 16 N -0.838 5.838 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.278 1.278 21 H 0.094 0.906 22 H 0.032 0.968 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 2.044 -7.881 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 C -0.109 4.109 4 N -0.230 5.230 5 C 0.022 3.978 6 N -0.199 5.199 7 N -0.200 5.200 8 C 0.003 3.997 9 C -0.162 4.162 10 C -0.147 4.147 11 C 0.092 3.908 12 H 0.046 0.954 13 C -0.599 4.599 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.470 5.470 17 Si 0.769 3.231 18 H -0.192 1.192 19 H -0.219 1.219 20 H -0.203 1.203 21 H 0.113 0.887 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.344 1.542 -8.280 8.429 hybrid contribution -0.598 -0.016 0.929 1.105 sum -0.254 1.526 -7.350 7.511 Atomic orbital electron populations 1.21587 0.93330 1.03102 1.00783 1.19829 0.96790 0.85675 1.03583 1.25289 0.99273 0.99624 0.86754 1.70921 1.20538 1.03622 1.27927 1.26127 0.93308 0.95702 0.82642 1.50876 1.51203 1.11244 1.06600 1.77454 1.26259 0.92900 1.23355 1.22039 1.00324 0.82818 0.94531 1.21994 0.98127 1.00203 0.95854 1.21693 1.00156 0.97329 0.95564 1.17688 0.96457 0.85924 0.90720 0.95381 1.21033 1.25288 1.01739 1.11842 0.92264 1.25617 0.97404 0.94928 0.99393 1.70218 1.39276 1.03768 1.33773 0.85762 0.79499 0.77796 0.80018 1.19209 1.21882 1.20348 0.88704 0.94917 0.93156 0.88576 0.90183 0.89433 0.88150 0.85314 0.91612 0.89507 0.92672 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.89 71.98 0.71 -3.49 16 2 C -0.02 -0.70 6.56 29.85 0.20 -0.50 16 3 C 0.17 8.24 7.40 138.48 1.02 9.26 16 4 N -0.50 -27.75 8.30 -179.30 -1.49 -29.24 16 5 C 0.30 15.35 6.88 138.37 0.95 16.30 16 6 N -0.41 -18.08 4.04 -338.34 -1.37 -19.45 16 7 N -0.37 -17.10 12.74 -51.07 -0.65 -17.75 16 8 C 0.12 3.89 7.30 86.52 0.63 4.52 16 9 C -0.12 -3.43 5.95 30.75 0.18 -3.25 16 10 C -0.11 -3.95 5.24 30.79 0.16 -3.79 16 11 C 0.11 5.58 2.49 -12.07 -0.03 5.55 16 12 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 13 C -0.56 -30.63 8.53 25.60 0.22 -30.41 16 14 H 0.06 3.15 7.75 -2.91 -0.02 3.13 16 15 C 0.03 1.89 5.12 84.65 0.43 2.33 16 16 N -0.84 -49.26 10.66 21.44 0.23 -49.03 16 17 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 25 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 28 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 30 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -70.07 265.63 4.33 -65.74 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.09 Total: 6.75 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.48 Total: -3.48 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -3.28 Total: -115.48 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.07 4.33 -65.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.815 kcal (2) G-P(sol) polarization free energy of solvation -70.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds