Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47087 * 2 1 4 4 N 1.30833 * 126.46839 * 270.00060 * 3 2 1 5 5 N 1.28906 * 109.74441 * 179.97438 * 4 3 2 6 6 C 1.29835 * 109.47582 * 359.97438 * 5 4 3 7 7 N 1.34697 * 126.46375 * 89.99603 * 3 2 1 8 8 C 1.46264 * 128.84608 * 0.09930 * 7 3 2 9 9 C 1.53321 * 108.85422 * 162.86528 * 8 7 3 10 10 C 1.53448 * 109.41739 * 50.21977 * 9 8 7 11 11 C 1.50807 * 128.52263 * 180.14412 * 6 5 4 12 12 H 1.08995 * 109.72947 * 283.69826 * 11 6 5 13 13 C 1.50699 * 109.72827 * 44.33212 * 11 6 5 14 14 H 1.07998 * 120.00418 * 35.10943 * 13 11 6 15 15 C 1.37881 * 119.99898 * 215.10792 * 13 11 6 16 16 N 1.31518 * 120.00185 * 185.83856 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 5.84322 * 15 13 11 18 18 H 1.48497 * 109.47300 * 84.78077 * 17 15 13 19 19 H 1.48495 * 109.47268 * 204.78436 * 17 15 13 20 20 H 1.48503 * 109.47158 * 324.78381 * 17 15 13 21 21 H 1.08991 * 109.47104 * 59.99798 * 1 2 3 22 22 H 1.08999 * 109.47007 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46655 * 299.99636 * 1 2 3 24 24 H 1.08997 * 109.47039 * 240.00342 * 2 1 3 25 25 H 1.09005 * 109.47080 * 120.00075 * 2 1 3 26 26 H 1.08996 * 109.58978 * 282.71742 * 8 7 3 27 27 H 1.08996 * 109.59319 * 43.01348 * 8 7 3 28 28 H 1.08998 * 109.44625 * 170.38879 * 9 8 7 29 29 H 1.09001 * 109.45095 * 290.31940 * 9 8 7 30 30 H 1.08999 * 109.45156 * 170.68612 * 10 9 8 31 31 H 1.09001 * 109.47029 * 50.62673 * 10 9 8 32 32 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2916 2.1540 -1.0521 5 7 2.7026 3.3181 -0.6812 6 6 2.7225 3.3772 0.6157 7 7 2.2992 2.1756 1.0833 8 6 2.1773 1.8252 2.4981 9 6 2.9849 2.8297 3.3286 10 6 2.6044 4.2572 2.9138 11 6 3.1267 4.5321 1.4972 12 1 4.2131 4.6182 1.5157 13 6 2.5242 5.8091 0.9707 14 1 1.5448 5.7967 0.5158 15 6 3.2234 6.9933 1.0698 16 7 2.6537 8.1249 0.7164 17 14 4.9797 6.9907 1.7058 18 1 5.9107 6.6943 0.5875 19 1 5.3012 8.3228 2.2777 20 1 5.1236 5.9525 2.7579 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.1293 1.8640 2.7952 27 1 2.5663 0.8201 2.6606 28 1 2.7661 2.6848 4.3865 29 1 4.0492 2.6728 3.1535 30 1 3.0494 4.9682 3.6099 31 1 1.5196 4.3630 2.9286 32 1 3.1458 8.9579 0.7857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = 59.765146 kcal Electronic energy + Delta-G solvation = -15343.594287 eV Core-core repulsion = 12918.843878 eV Total energy + Delta-G solvation = -2424.750409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.54462 -36.73858 -34.55884 -33.09433 -31.60335 -30.17963 -28.16416 -25.56888 -23.87998 -22.48136 -22.00938 -20.10740 -18.81834 -17.11091 -16.31913 -15.76130 -14.80329 -14.22007 -14.13229 -14.04547 -13.62482 -13.33892 -12.69485 -12.48562 -12.04537 -11.81081 -11.70842 -11.16890 -10.93328 -10.78519 -10.64116 -10.57872 -10.00723 -9.93969 -9.57265 -9.47189 -9.31170 -8.65334 -8.11256 -6.13698 -4.14386 2.53221 3.07541 3.24693 3.31308 3.34345 3.71443 4.34655 4.60807 4.75164 4.90208 4.95023 5.09947 5.22681 5.28415 5.43036 5.49715 5.61339 5.75178 5.76704 5.83702 5.96076 6.16947 6.18567 6.26040 6.50535 6.62999 6.80670 6.97074 7.05855 7.51868 7.63677 8.42052 8.92998 9.44954 9.61064 10.99153 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039321 B = 0.009353 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.924064 B = 2992.867117 C = 3311.699329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C 0.144 3.856 4 N -0.308 5.308 5 N -0.288 5.288 6 C 0.223 3.777 7 N -0.480 5.480 8 C 0.111 3.889 9 C -0.140 4.140 10 C -0.121 4.121 11 C 0.095 3.905 12 H 0.059 0.941 13 C -0.498 4.498 14 H 0.078 0.922 15 C 0.079 3.921 16 N -0.889 5.889 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -14.954 7.068 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 C -0.124 4.124 4 N -0.148 5.148 5 N -0.125 5.125 6 C -0.044 4.044 7 N -0.173 5.173 8 C -0.012 4.012 9 C -0.178 4.178 10 C -0.159 4.159 11 C 0.073 3.927 12 H 0.077 0.923 13 C -0.536 4.536 14 H 0.096 0.904 15 C -0.124 4.124 16 N -0.526 5.526 17 Si 0.700 3.300 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.532 -14.335 5.577 15.391 hybrid contribution 0.730 -0.272 1.649 1.823 sum 0.198 -14.607 7.226 16.297 Atomic orbital electron populations 1.21733 0.94155 1.01798 1.02737 1.19807 0.96199 0.87160 1.03499 1.24381 1.06453 0.97590 0.83927 1.74422 1.16707 0.99505 1.24182 1.74126 1.18470 1.10903 1.09035 1.25835 0.98716 0.87215 0.92626 1.46149 1.50644 1.12769 1.07726 1.21846 1.01864 0.99653 0.77850 1.22102 1.00031 0.96604 0.99083 1.22151 1.02004 0.93011 0.98772 1.18013 0.97083 0.89272 0.88285 0.92312 1.20588 1.04955 0.88421 1.39638 0.90401 1.24991 0.97684 0.95300 0.94454 1.69876 1.37207 0.98182 1.47307 0.86927 0.85910 0.77397 0.79780 1.19692 1.21172 1.19058 0.91763 0.91842 0.92904 0.88960 0.90861 0.90089 0.89957 0.90102 0.91376 0.90965 0.91512 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 37.16 0.37 -1.25 16 2 C -0.03 -0.33 6.34 -27.88 -0.18 -0.51 16 3 C 0.14 2.64 7.32 -155.45 -1.14 1.50 16 4 N -0.31 -7.05 12.23 32.70 0.40 -6.65 16 5 N -0.29 -7.45 12.12 32.76 0.40 -7.05 16 6 C 0.22 5.19 7.06 -155.31 -1.10 4.09 16 7 N -0.48 -8.93 3.11 -110.86 -0.35 -9.27 16 8 C 0.11 1.49 6.74 -4.00 -0.03 1.47 16 9 C -0.14 -1.96 5.97 -26.33 -0.16 -2.12 16 10 C -0.12 -2.26 5.28 -26.26 -0.14 -2.40 16 11 C 0.09 2.22 2.19 -92.63 -0.20 2.02 16 12 H 0.06 1.39 5.23 -51.93 -0.27 1.12 16 13 C -0.50 -13.99 8.79 -34.44 -0.30 -14.29 16 14 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 16 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 17 Si 0.87 20.87 27.02 -169.99 -4.59 16.27 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -5.81 6.77 56.52 0.38 -5.43 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 264.87 15.07 3.99 3.99 Total: -1.00 -33.60 264.87 -6.80 -40.41 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.46 Total: -2.24 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.97 Total: -9.35 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 1.23 Total: -49.08 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.59 Total: 16.27 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.60 -6.80 -40.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.174 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds