Wall clock time and date at job start Mon Mar 30 2020 03:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47087 * 2 1 4 4 N 1.30833 * 126.46839 * 270.00060 * 3 2 1 5 5 N 1.28906 * 109.74441 * 179.97438 * 4 3 2 6 6 C 1.29835 * 109.47582 * 359.97438 * 5 4 3 7 7 N 1.34697 * 126.46375 * 89.99603 * 3 2 1 8 8 C 1.46264 * 128.84608 * 0.09930 * 7 3 2 9 9 C 1.53321 * 108.85422 * 162.86528 * 8 7 3 10 10 C 1.53448 * 109.41739 * 50.21977 * 9 8 7 11 11 C 1.50807 * 128.52263 * 180.14412 * 6 5 4 12 12 H 1.08995 * 109.72947 * 283.69826 * 11 6 5 13 13 C 1.50699 * 109.72827 * 44.33212 * 11 6 5 14 14 H 1.07998 * 120.00418 * 35.10943 * 13 11 6 15 15 C 1.37881 * 119.99898 * 215.10792 * 13 11 6 16 16 N 1.31518 * 120.00185 * 185.83856 * 15 13 11 17 17 Si 1.86801 * 120.00025 * 5.84322 * 15 13 11 18 18 H 1.48497 * 109.47300 * 84.78077 * 17 15 13 19 19 H 1.48495 * 109.47268 * 204.78436 * 17 15 13 20 20 H 1.48503 * 109.47158 * 324.78381 * 17 15 13 21 21 H 1.08991 * 109.47104 * 59.99798 * 1 2 3 22 22 H 1.08999 * 109.47007 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46655 * 299.99636 * 1 2 3 24 24 H 1.08997 * 109.47039 * 240.00342 * 2 1 3 25 25 H 1.09005 * 109.47080 * 120.00075 * 2 1 3 26 26 H 1.08996 * 109.58978 * 282.71742 * 8 7 3 27 27 H 1.08996 * 109.59319 * 43.01348 * 8 7 3 28 28 H 1.08998 * 109.44625 * 170.38879 * 9 8 7 29 29 H 1.09001 * 109.45095 * 290.31940 * 9 8 7 30 30 H 1.08999 * 109.45156 * 170.68612 * 10 9 8 31 31 H 1.09001 * 109.47029 * 50.62673 * 10 9 8 32 32 H 0.97003 * 119.99853 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2916 2.1540 -1.0521 5 7 2.7026 3.3181 -0.6812 6 6 2.7225 3.3772 0.6157 7 7 2.2992 2.1756 1.0833 8 6 2.1773 1.8252 2.4981 9 6 2.9849 2.8297 3.3286 10 6 2.6044 4.2572 2.9138 11 6 3.1267 4.5321 1.4972 12 1 4.2131 4.6182 1.5157 13 6 2.5242 5.8091 0.9707 14 1 1.5448 5.7967 0.5158 15 6 3.2234 6.9933 1.0698 16 7 2.6537 8.1249 0.7164 17 14 4.9797 6.9907 1.7058 18 1 5.9107 6.6943 0.5875 19 1 5.3012 8.3228 2.2777 20 1 5.1236 5.9525 2.7579 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.1293 1.8640 2.7952 27 1 2.5663 0.8201 2.6606 28 1 2.7661 2.6848 4.3865 29 1 4.0492 2.6728 3.1535 30 1 3.0494 4.9682 3.6099 31 1 1.5196 4.3630 2.9286 32 1 3.1458 8.9579 0.7857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:01 Heat of formation + Delta-G solvation = 36.915828 kcal Electronic energy + Delta-G solvation = -15344.585108 eV Core-core repulsion = 12918.843878 eV Total energy + Delta-G solvation = -2425.741230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.11045 -38.19832 -36.01362 -34.72756 -33.25931 -31.69002 -29.67996 -27.27107 -25.01583 -24.20779 -23.46234 -21.50661 -20.31397 -19.18504 -17.66479 -17.23572 -16.59909 -15.72908 -15.44342 -15.21532 -15.01225 -14.65795 -14.47711 -13.62163 -13.58658 -13.27195 -12.84584 -12.67691 -12.38038 -12.21134 -12.08725 -12.03116 -11.78018 -11.56280 -11.45572 -11.05739 -10.86213 -10.76460 -9.82380 -8.32371 -6.38476 1.03311 1.31624 1.38572 1.45675 1.74585 2.02635 2.31859 3.01926 3.39247 3.61652 3.81042 3.89661 3.99767 4.18527 4.33545 4.40254 4.47905 4.53275 4.61879 4.71096 4.85748 4.97267 4.98120 5.11558 5.18005 5.27363 5.30826 5.39958 5.47347 5.57109 6.14640 6.27199 6.64523 7.24344 7.97423 8.85312 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039321 B = 0.009353 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.924064 B = 2992.867117 C = 3311.699329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C 0.168 3.832 4 N -0.360 5.360 5 N -0.349 5.349 6 C 0.199 3.801 7 N -0.474 5.474 8 C 0.098 3.902 9 C -0.130 4.130 10 C -0.117 4.117 11 C 0.093 3.907 12 H 0.058 0.942 13 C -0.503 4.503 14 H 0.017 0.983 15 C 0.016 3.984 16 N -0.945 5.945 17 Si 0.943 3.057 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.225 1.225 21 H 0.036 0.964 22 H 0.101 0.899 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -18.544 10.106 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.100 4.100 4 N -0.200 5.200 5 N -0.186 5.186 6 C -0.070 4.070 7 N -0.165 5.165 8 C -0.023 4.023 9 C -0.168 4.168 10 C -0.156 4.156 11 C 0.072 3.928 12 H 0.076 0.924 13 C -0.542 4.542 14 H 0.035 0.965 15 C -0.181 4.181 16 N -0.584 5.584 17 Si 0.765 3.235 18 H -0.204 1.204 19 H -0.204 1.204 20 H -0.148 1.148 21 H 0.056 0.944 22 H 0.119 0.881 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.134 0.866 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.448 -17.966 8.651 19.945 hybrid contribution 0.264 0.747 0.635 1.015 sum 0.713 -17.219 9.285 19.576 Atomic orbital electron populations 1.21719 0.93029 1.03849 1.01410 1.20195 0.96915 0.83335 1.06087 1.25508 1.02717 0.99063 0.82752 1.74283 1.19508 0.99527 1.26668 1.73973 1.20403 1.13031 1.11185 1.25549 1.00249 0.89078 0.92145 1.46374 1.49204 1.10991 1.09965 1.22424 1.03537 1.01872 0.74432 1.22083 1.00308 0.92652 1.01741 1.21961 1.01025 0.97175 0.95409 1.17989 0.96740 0.87199 0.90904 0.92423 1.20708 1.02832 0.91384 1.39229 0.96458 1.25951 1.02773 0.94499 0.94911 1.70046 1.39484 0.99118 1.49748 0.85816 0.78889 0.78825 0.79959 1.20372 1.20414 1.14784 0.94444 0.88058 0.92964 0.88002 0.86601 0.88139 0.85123 0.85392 0.90952 0.90516 0.92823 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.90 71.98 0.71 -1.93 16 2 C -0.03 -0.54 6.34 29.85 0.19 -0.35 16 3 C 0.17 5.89 7.32 138.14 1.01 6.90 16 4 N -0.36 -16.85 12.23 -50.46 -0.62 -17.47 16 5 N -0.35 -18.80 12.12 -50.28 -0.61 -19.41 16 6 C 0.20 9.37 7.06 138.14 0.97 10.35 16 7 N -0.47 -16.56 3.11 -504.65 -1.57 -18.14 16 8 C 0.10 2.12 6.74 86.53 0.58 2.70 16 9 C -0.13 -2.99 5.97 30.85 0.18 -2.80 16 10 C -0.12 -4.16 5.28 30.90 0.16 -4.00 16 11 C 0.09 4.37 2.19 -12.10 -0.03 4.35 16 12 H 0.06 2.68 5.23 -2.39 -0.01 2.67 16 13 C -0.50 -29.84 8.79 25.60 0.22 -29.62 16 14 H 0.02 1.18 8.06 -2.91 -0.02 1.16 16 15 C 0.02 0.97 5.47 84.65 0.46 1.43 16 16 N -0.94 -60.24 13.96 21.45 0.30 -59.94 16 17 Si 0.94 43.49 27.02 68.60 1.85 45.35 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.23 -8.84 6.77 99.48 0.67 -8.17 16 21 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.12 1.49 7.75 -2.38 -0.02 1.47 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.13 1.68 7.84 -2.39 -0.02 1.66 16 28 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 2.01 8.08 -2.39 -0.02 2.00 16 32 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -82.76 264.87 4.90 -77.85 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.07 Total: 4.72 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 4.48 Total: -12.96 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -2.50 Total: -114.95 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.35 kcal Total: -82.76 4.90 -77.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.771 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds