Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 N 1.30837 * 126.46659 * 269.97523 * 3 2 1 5 5 N 1.28903 * 109.74156 * 179.97438 * 4 3 2 6 6 C 1.29778 * 109.50424 * 0.02562 * 5 4 3 7 7 N 1.34693 * 126.46343 * 89.99180 * 3 2 1 8 8 C 1.46257 * 128.85103 * 0.12596 * 7 3 2 9 9 C 1.53322 * 108.72933 * 162.86917 * 8 7 3 10 10 C 1.53135 * 109.57772 * 50.30742 * 9 8 7 11 11 H 1.09001 * 109.50077 * 50.51991 * 10 9 8 12 12 C 1.50704 * 109.49867 * 170.62148 * 10 9 8 13 13 H 1.08001 * 119.99598 * 359.82862 * 12 10 9 14 14 C 1.37873 * 119.99911 * 179.83291 * 12 10 9 15 15 N 1.31513 * 120.00041 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00004 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46730 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47000 * 119.99553 * 16 14 12 19 19 H 1.48498 * 109.47425 * 240.00171 * 16 14 12 20 20 C 1.50798 * 128.57937 * 180.14698 * 6 5 4 21 21 H 1.08995 * 109.47543 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47237 * 300.00314 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00177 * 1 2 3 24 24 H 1.08999 * 109.47704 * 239.99911 * 2 1 3 25 25 H 1.09006 * 109.47035 * 119.99666 * 2 1 3 26 26 H 1.09003 * 109.59056 * 43.09847 * 8 7 3 27 27 H 1.09000 * 109.59460 * 282.64831 * 8 7 3 28 28 H 1.09004 * 109.45119 * 290.27258 * 9 8 7 29 29 H 1.09003 * 109.43334 * 170.33213 * 9 8 7 30 30 H 0.97008 * 120.00035 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.73005 * 44.37589 * 20 6 5 32 32 H 1.08998 * 109.73124 * 283.74322 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2921 2.1538 -1.0522 5 7 2.7030 3.3179 -0.6812 6 6 2.7236 3.3774 0.6150 7 7 2.2991 2.1756 1.0833 8 6 2.1777 1.8252 2.4980 9 6 2.9859 2.8316 3.3256 10 6 2.6061 4.2568 2.9140 11 1 1.5214 4.3632 2.9296 12 6 3.2224 5.2394 3.8763 13 1 3.8225 4.8837 4.7007 14 6 3.0200 6.5923 3.7041 15 7 2.2896 7.0253 2.6999 16 14 3.7834 7.8102 4.8972 17 1 4.5538 7.0735 5.9312 18 1 4.6934 8.7223 4.1589 19 1 2.7104 8.6028 5.5497 20 6 3.1277 4.5318 1.4971 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5684 0.8207 2.6607 27 1 1.1299 1.8649 2.7958 28 1 4.0502 2.6744 3.1498 29 1 2.7679 2.6889 4.3840 30 1 2.1475 7.9773 2.5785 31 1 2.6910 5.4555 1.1175 32 1 4.2141 4.6186 1.5148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = 53.659530 kcal Electronic energy + Delta-G solvation = -15202.520281 eV Core-core repulsion = 12777.505113 eV Total energy + Delta-G solvation = -2425.015168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.61713 -36.67399 -34.48643 -33.20299 -31.19436 -29.97040 -28.05939 -25.43926 -23.86406 -23.30220 -21.26305 -20.30303 -18.64677 -16.56868 -16.27567 -15.74675 -14.70906 -14.42572 -14.12934 -13.79677 -13.31803 -12.93194 -12.82246 -12.48043 -11.86745 -11.54218 -11.41794 -11.17431 -11.05095 -10.87302 -10.65743 -10.49783 -10.13903 -9.77356 -9.51889 -9.41009 -9.11245 -8.60416 -8.20599 -6.16592 -4.24731 2.46543 3.11505 3.22404 3.31493 3.33625 3.52767 4.30816 4.58477 4.93411 5.04265 5.12305 5.19880 5.29944 5.41511 5.51333 5.53210 5.70133 5.77551 6.01274 6.15424 6.23063 6.29975 6.45553 6.68588 6.71270 6.83772 7.05901 7.46378 7.49768 7.66779 7.84647 8.15736 8.78543 9.41616 9.43130 10.90728 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052546 B = 0.007483 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.737569 B = 3740.934391 C = 4011.535927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C 0.150 3.850 4 N -0.309 5.309 5 N -0.317 5.317 6 C 0.208 3.792 7 N -0.468 5.468 8 C 0.105 3.895 9 C -0.127 4.127 10 C 0.047 3.953 11 H 0.033 0.967 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.030 4.030 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.265 0.735 31 H 0.118 0.882 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 -11.614 0.736 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C -0.118 4.118 4 N -0.149 5.149 5 N -0.156 5.156 6 C -0.060 4.060 7 N -0.160 5.160 8 C -0.018 4.018 9 C -0.164 4.164 10 C 0.028 3.972 11 H 0.051 0.949 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.070 4.070 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.617 -11.047 -0.789 11.193 hybrid contribution 0.206 0.335 1.922 1.962 sum -1.411 -10.713 1.133 10.864 Atomic orbital electron populations 1.21731 0.94061 1.01927 1.02729 1.19830 0.96282 0.87025 1.03668 1.24400 1.05896 0.97680 0.83790 1.74313 1.17071 0.99284 1.24233 1.73993 1.20014 1.12431 1.09115 1.25879 0.98803 0.89072 0.92207 1.46061 1.49255 1.12394 1.08273 1.22098 1.02354 1.00161 0.77145 1.22078 0.98900 0.96567 0.98896 1.18804 0.97278 0.89561 0.91556 0.94894 1.21050 1.32614 0.90688 1.11589 0.92035 1.25012 0.94779 0.98584 0.95451 1.69876 1.38155 1.14927 1.29326 0.86475 0.79094 0.81118 0.80978 1.19727 1.20817 1.20941 1.20719 1.00820 0.92037 0.93384 0.91737 0.92746 0.91871 0.88930 0.90609 0.90257 0.90115 0.91987 0.90156 0.92545 0.86380 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.03 -0.35 6.34 -27.88 -0.18 -0.53 16 3 C 0.15 2.71 7.32 -155.45 -1.14 1.57 16 4 N -0.31 -6.71 12.23 32.70 0.40 -6.31 16 5 N -0.32 -7.55 12.20 32.76 0.40 -7.15 16 6 C 0.21 4.66 7.75 -155.29 -1.20 3.46 16 7 N -0.47 -8.86 3.11 -110.85 -0.35 -9.21 16 8 C 0.11 1.63 6.75 -4.01 -0.03 1.60 16 9 C -0.13 -2.27 5.18 -26.49 -0.14 -2.41 16 10 C 0.05 1.08 2.12 -91.46 -0.19 0.88 16 11 H 0.03 0.83 8.12 -51.93 -0.42 0.40 16 12 C -0.52 -13.11 8.53 -34.44 -0.29 -13.41 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.14 11.49 55.43 0.64 -23.50 16 16 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.03 -0.70 5.20 -27.59 -0.14 -0.84 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 26 H 0.08 0.96 7.85 -51.93 -0.41 0.56 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 29 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.12 3.10 6.51 -51.93 -0.34 2.76 16 32 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 LS Contribution 265.63 15.07 4.00 4.00 Total: -1.00 -29.79 265.63 -7.46 -37.25 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.49 Total: -0.88 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.04 Total: -9.33 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 1.09 Total: -46.17 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.79 -7.46 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.910 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds