Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47447 * 2 1 4 4 N 1.30837 * 126.46659 * 269.97523 * 3 2 1 5 5 N 1.28903 * 109.74156 * 179.97438 * 4 3 2 6 6 C 1.29778 * 109.50424 * 0.02562 * 5 4 3 7 7 N 1.34693 * 126.46343 * 89.99180 * 3 2 1 8 8 C 1.46257 * 128.85103 * 0.12596 * 7 3 2 9 9 C 1.53322 * 108.72933 * 162.86917 * 8 7 3 10 10 C 1.53135 * 109.57772 * 50.30742 * 9 8 7 11 11 H 1.09001 * 109.50077 * 50.51991 * 10 9 8 12 12 C 1.50704 * 109.49867 * 170.62148 * 10 9 8 13 13 H 1.08001 * 119.99598 * 359.82862 * 12 10 9 14 14 C 1.37873 * 119.99911 * 179.83291 * 12 10 9 15 15 N 1.31513 * 120.00041 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00004 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46730 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47000 * 119.99553 * 16 14 12 19 19 H 1.48498 * 109.47425 * 240.00171 * 16 14 12 20 20 C 1.50798 * 128.57937 * 180.14698 * 6 5 4 21 21 H 1.08995 * 109.47543 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47237 * 300.00314 * 1 2 3 23 23 H 1.09006 * 109.46531 * 60.00177 * 1 2 3 24 24 H 1.08999 * 109.47704 * 239.99911 * 2 1 3 25 25 H 1.09006 * 109.47035 * 119.99666 * 2 1 3 26 26 H 1.09003 * 109.59056 * 43.09847 * 8 7 3 27 27 H 1.09000 * 109.59460 * 282.64831 * 8 7 3 28 28 H 1.09004 * 109.45119 * 290.27258 * 9 8 7 29 29 H 1.09003 * 109.43334 * 170.33213 * 9 8 7 30 30 H 0.97008 * 120.00035 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.73005 * 44.37589 * 20 6 5 32 32 H 1.08998 * 109.73124 * 283.74322 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2921 2.1538 -1.0522 5 7 2.7030 3.3179 -0.6812 6 6 2.7236 3.3774 0.6150 7 7 2.2991 2.1756 1.0833 8 6 2.1777 1.8252 2.4980 9 6 2.9859 2.8316 3.3256 10 6 2.6061 4.2568 2.9140 11 1 1.5214 4.3632 2.9296 12 6 3.2224 5.2394 3.8763 13 1 3.8225 4.8837 4.7007 14 6 3.0200 6.5923 3.7041 15 7 2.2896 7.0253 2.6999 16 14 3.7834 7.8102 4.8972 17 1 4.5538 7.0735 5.9312 18 1 4.6934 8.7223 4.1589 19 1 2.7104 8.6028 5.5497 20 6 3.1277 4.5318 1.4971 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5684 0.8207 2.6607 27 1 1.1299 1.8649 2.7958 28 1 4.0502 2.6744 3.1498 29 1 2.7679 2.6889 4.3840 30 1 2.1475 7.9773 2.5785 31 1 2.6910 5.4555 1.1175 32 1 4.2141 4.6186 1.5148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261064344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = 36.620984 kcal Electronic energy + Delta-G solvation = -15203.259128 eV Core-core repulsion = 12777.505113 eV Total energy + Delta-G solvation = -2425.754015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.18405 -38.29298 -35.87838 -34.76671 -32.86325 -31.50024 -29.60229 -27.28686 -25.03025 -24.84637 -22.98180 -21.66542 -20.27018 -18.46628 -17.66857 -17.32243 -16.52572 -15.70571 -15.38493 -15.12972 -14.96133 -14.62578 -14.32769 -13.57685 -13.36804 -12.99645 -12.85648 -12.79329 -12.54092 -12.30531 -12.27951 -12.09053 -11.78119 -11.44025 -11.13554 -10.99296 -10.87992 -10.57478 -9.87675 -8.14484 -6.28885 0.95483 1.43133 1.46552 1.56479 1.69643 1.88509 2.42615 3.13073 3.37197 3.67905 3.75986 3.96774 4.02272 4.28884 4.33779 4.38215 4.59653 4.66281 4.74936 4.79531 4.96417 4.98263 5.08434 5.20713 5.23826 5.30068 5.35841 5.56441 5.70830 5.89250 6.11657 6.23532 6.82869 7.41992 7.81444 8.92025 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052546 B = 0.007483 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.737569 B = 3740.934391 C = 4011.535927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C 0.174 3.826 4 N -0.350 5.350 5 N -0.352 5.352 6 C 0.185 3.815 7 N -0.466 5.466 8 C 0.103 3.897 9 C -0.119 4.119 10 C 0.046 3.954 11 H 0.003 0.997 12 C -0.530 4.530 13 H 0.069 0.931 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.957 3.043 17 H -0.260 1.260 18 H -0.286 1.286 19 H -0.283 1.283 20 C -0.016 4.016 21 H 0.100 0.900 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.262 0.738 31 H 0.080 0.920 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 -14.393 2.295 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.095 4.095 4 N -0.190 5.190 5 N -0.191 5.191 6 C -0.084 4.084 7 N -0.157 5.157 8 C -0.018 4.018 9 C -0.156 4.156 10 C 0.026 3.974 11 H 0.021 0.979 12 C -0.568 4.568 13 H 0.087 0.913 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.783 3.217 17 H -0.184 1.184 18 H -0.212 1.212 19 H -0.209 1.209 20 C -0.056 4.056 21 H 0.119 0.881 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.628 -13.847 0.790 13.965 hybrid contribution 0.172 1.130 1.418 1.822 sum -1.456 -12.716 2.209 12.989 Atomic orbital electron populations 1.21720 0.92864 1.03934 1.01520 1.20224 0.97076 0.83329 1.06162 1.25510 1.02451 0.99112 0.82440 1.74229 1.19378 0.99267 1.26102 1.73880 1.21013 1.14069 1.10165 1.25493 1.00653 0.90276 0.91960 1.46262 1.48342 1.11152 1.09906 1.22403 1.03244 1.01592 0.74531 1.21935 0.99369 0.93798 1.00541 1.18735 0.95159 0.92731 0.90731 0.97865 1.21473 1.32089 0.91316 1.11909 0.91324 1.25808 0.95335 1.00586 0.96881 1.70034 1.39774 1.14940 1.31078 0.85513 0.78163 0.78889 0.79136 1.18411 1.21195 1.20939 1.20332 0.99750 0.91341 0.94214 0.88103 0.93209 0.93900 0.87540 0.86989 0.85287 0.88528 0.91907 0.88084 0.92889 0.90203 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.89 71.98 0.71 -1.88 16 2 C -0.03 -0.58 6.34 29.85 0.19 -0.39 16 3 C 0.17 5.91 7.32 138.14 1.01 6.92 16 4 N -0.35 -15.19 12.23 -50.46 -0.62 -15.81 16 5 N -0.35 -17.28 12.20 -50.27 -0.61 -17.89 16 6 C 0.19 8.46 7.75 138.13 1.07 9.53 16 7 N -0.47 -16.80 3.11 -504.63 -1.57 -18.37 16 8 C 0.10 2.80 6.75 86.53 0.58 3.39 16 9 C -0.12 -3.99 5.18 30.75 0.16 -3.83 16 10 C 0.05 2.11 2.12 -11.33 -0.02 2.08 16 11 H 0.00 0.16 8.12 -2.39 -0.02 0.15 16 12 C -0.53 -26.72 8.53 25.60 0.22 -26.50 16 13 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.01 0.70 5.30 84.65 0.45 1.15 16 15 N -0.92 -52.03 11.49 21.45 0.25 -51.78 16 16 Si 0.96 41.64 29.54 68.60 2.03 43.66 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.02 -0.79 5.20 30.04 0.16 -0.63 16 21 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.11 1.56 7.76 -2.38 -0.02 1.54 16 26 H 0.13 2.33 7.85 -2.39 -0.02 2.31 16 27 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 29 H 0.10 2.98 8.12 -2.39 -0.02 2.96 16 30 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 31 H 0.08 4.49 6.51 -2.39 -0.02 4.47 16 32 H 0.06 3.13 8.11 -2.39 -0.02 3.12 16 Total: -1.00 -68.09 265.63 5.10 -62.99 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.10 Total: 7.38 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 4.53 Total: -10.17 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -2.56 Total: -103.86 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.09 5.10 -62.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.612 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds