Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 N 1.46506 * 109.46983 * 119.99671 * 2 1 3 5 5 N 1.39997 * 126.19948 * 304.88515 * 4 2 1 6 6 C 1.31322 * 109.21815 * 180.02562 * 5 4 2 7 7 C 1.38990 * 108.82738 * 0.02562 * 6 5 4 8 8 C 1.37465 * 126.19842 * 124.90810 * 4 2 1 9 9 C 1.40237 * 126.66193 * 0.02562 * 8 4 2 10 10 H 1.08000 * 119.99615 * 24.08529 * 9 8 4 11 11 C 1.40165 * 120.00237 * 204.08267 * 9 8 4 12 12 N 1.30760 * 119.99931 * 12.38757 * 11 9 8 13 13 Si 1.86805 * 119.99828 * 192.38374 * 11 9 8 14 14 H 1.48497 * 109.47037 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46983 * 120.00150 * 13 11 9 16 16 H 1.48495 * 109.47001 * 240.00281 * 13 11 9 17 17 C 1.51085 * 108.31485 * 179.97438 * 7 6 5 18 18 N 1.48046 * 105.66476 * 342.47729 * 17 7 6 19 19 C 1.48033 * 103.96027 * 27.71976 * 18 17 7 20 20 H 1.08996 * 109.46948 * 60.00468 * 1 2 3 21 21 H 1.08997 * 109.47126 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46937 * 300.00431 * 1 2 3 23 23 H 1.09000 * 109.46937 * 239.99569 * 2 1 3 24 24 H 1.09004 * 109.46810 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46907 * 299.99556 * 3 2 1 26 26 H 1.09000 * 109.47647 * 60.00003 * 3 2 1 27 27 H 0.96994 * 119.99566 * 174.92821 * 12 11 9 28 28 H 1.08999 * 110.20764 * 101.52300 * 17 7 6 29 29 H 1.08997 * 110.21188 * 223.42145 * 17 7 6 30 30 H 1.00898 * 111.00090 * 147.12045 * 18 17 7 31 31 H 1.08997 * 110.18047 * 213.17866 * 19 18 17 32 32 H 1.08998 * 110.28306 * 91.33696 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.6847 -0.3854 2.5212 6 6 2.3106 -1.2130 3.3262 7 6 3.0754 -2.0880 2.5637 8 6 2.8874 -1.7553 1.2211 9 6 3.4731 -2.3842 0.1129 10 1 3.5861 -1.8455 -0.8163 11 6 3.9118 -3.7118 0.2111 12 7 3.5641 -4.4408 1.2395 13 14 4.9931 -4.4396 -1.1271 14 1 5.2419 -3.4160 -2.1737 15 1 6.2868 -4.8699 -0.5386 16 1 4.3104 -5.6112 -1.7323 17 6 3.7902 -3.0336 3.5004 18 7 3.7361 -2.3924 4.8337 19 6 2.5075 -1.5681 4.7840 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.8055 -5.3797 1.2721 28 1 3.2802 -3.9966 3.5248 29 1 4.8260 -3.1631 3.1866 30 1 3.6777 -3.0844 5.5657 31 1 2.6375 -0.6632 5.3775 32 1 1.6544 -2.1388 5.1508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = 57.741433 kcal Electronic energy + Delta-G solvation = -15409.239917 eV Core-core repulsion = 12984.401753 eV Total energy + Delta-G solvation = -2424.838164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.43077 -37.97681 -35.63897 -35.34385 -31.42586 -29.62015 -28.66783 -28.11727 -26.74919 -24.33132 -21.74556 -21.28816 -19.53027 -18.50826 -17.26557 -16.73332 -16.31305 -15.58139 -15.45394 -14.90976 -14.53255 -14.19850 -13.70377 -13.50168 -13.46432 -13.23507 -13.04515 -12.88615 -12.56466 -12.52683 -12.18632 -12.06435 -11.97772 -11.66926 -11.18458 -10.45931 -9.80054 -9.46186 -8.59888 -8.46223 -6.44051 1.24715 1.41974 1.55766 1.71010 2.09763 2.27847 2.36878 3.22482 3.53684 3.62224 3.97013 4.16386 4.27886 4.45309 4.64630 4.70639 4.71769 4.79893 4.85119 4.89876 5.02010 5.17347 5.20437 5.29463 5.45469 5.57599 5.68817 5.87687 6.01112 6.48437 6.52991 6.68267 6.81866 7.21579 7.62028 8.41732 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.014583 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.094785 B = 1919.644066 C = 3089.761996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.159 3.841 3 C -0.145 4.145 4 N -0.422 5.422 5 N -0.368 5.368 6 C 0.011 3.989 7 C -0.368 4.368 8 C 0.257 3.743 9 C -0.492 4.492 10 H 0.080 0.920 11 C 0.046 3.954 12 N -0.809 5.809 13 Si 0.990 3.010 14 H -0.258 1.258 15 H -0.269 1.269 16 H -0.264 1.264 17 C 0.181 3.819 18 N -0.668 5.668 19 C 0.148 3.852 20 H 0.101 0.899 21 H 0.036 0.964 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.039 0.961 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.287 0.713 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.350 0.650 31 H 0.092 0.908 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 1.831 -1.822 2.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.057 3.943 3 C -0.203 4.203 4 N -0.210 5.210 5 N -0.191 5.191 6 C -0.153 4.153 7 C -0.381 4.381 8 C 0.137 3.863 9 C -0.528 4.528 10 H 0.098 0.902 11 C -0.172 4.172 12 N -0.435 5.435 13 Si 0.811 3.189 14 H -0.181 1.181 15 H -0.194 1.194 16 H -0.189 1.189 17 C 0.052 3.948 18 N -0.298 5.298 19 C 0.017 3.983 20 H 0.120 0.880 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.109 0.891 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.683 3.265 -1.923 4.146 hybrid contribution 0.230 -1.840 -0.422 1.902 sum -1.452 1.425 -2.345 3.105 Atomic orbital electron populations 1.21946 0.93239 1.01396 1.03185 1.21144 0.95594 0.93380 0.84141 1.22044 1.00371 0.94701 1.03168 1.49196 1.38609 1.29323 1.03850 1.76340 1.28343 1.26628 0.87747 1.23187 0.97939 0.96140 0.98014 1.20566 1.16874 1.08402 0.92256 1.18161 0.88299 0.85853 0.94033 1.18839 1.37933 0.98613 0.97432 0.90174 1.26619 0.95295 0.96664 0.98610 1.69876 1.36647 1.07934 1.29071 0.85034 0.77816 0.78398 0.77653 1.18123 1.19367 1.18872 1.19850 0.96627 0.93022 0.85270 1.63523 1.36041 1.24762 1.05499 1.20540 0.91959 0.98203 0.87602 0.88029 0.94439 0.92918 0.89094 0.94201 0.88026 0.93090 0.90271 0.94854 0.94951 0.83350 0.89004 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.39 71.98 0.68 -4.07 16 2 C 0.16 6.33 3.67 44.99 0.17 6.50 16 3 C -0.14 -4.87 9.51 71.98 0.68 -4.18 16 4 N -0.42 -21.45 3.36 -319.08 -1.07 -22.52 16 5 N -0.37 -19.29 12.37 -47.19 -0.58 -19.87 16 6 C 0.01 0.56 8.19 43.02 0.35 0.91 16 7 C -0.37 -20.35 6.01 -19.24 -0.12 -20.46 16 8 C 0.26 14.40 6.54 39.07 0.26 14.65 16 9 C -0.49 -26.28 8.80 23.22 0.20 -26.08 16 10 H 0.08 4.04 7.24 -2.91 -0.02 4.02 16 11 C 0.05 2.30 5.39 85.32 0.46 2.76 16 12 N -0.81 -41.51 9.74 21.87 0.21 -41.29 16 13 Si 0.99 37.61 29.58 68.60 2.03 39.64 16 14 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 15 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 16 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 17 C 0.18 8.92 5.74 85.46 0.49 9.41 16 18 N -0.67 -27.10 7.71 -514.67 -3.97 -31.06 16 19 C 0.15 6.05 7.45 85.54 0.64 6.69 16 20 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.09 3.57 6.98 -2.39 -0.02 3.56 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.42 16 25 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.29 13.26 8.30 -92.71 -0.77 12.49 16 28 H 0.03 1.68 7.30 -2.39 -0.02 1.66 16 29 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.35 11.43 8.92 -89.70 -0.80 10.63 16 31 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -65.53 266.78 0.75 -64.78 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.32 Total: 24.21 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 3.81 Total: -13.88 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -5.41 Total: -114.75 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -65.53 0.75 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.520 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds