Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35320 * 126.12921 * 2 1 4 4 C 1.39861 * 107.92087 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.89904 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47210 * 325.00374 * 5 4 3 7 7 C 1.50702 * 109.46869 * 85.00081 * 5 4 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 5 4 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 5 4 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 5 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 5 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 N 1.46899 * 109.47483 * 205.00043 * 5 4 3 16 16 C 1.46896 * 111.00177 * 300.00131 * 15 5 4 17 17 C 1.53003 * 117.50259 * 223.61979 * 16 15 5 18 18 C 1.53004 * 60.00070 * 252.50924 * 17 16 15 19 19 N 1.30837 * 108.20415 * 0.26213 * 4 3 2 20 20 N 1.34953 * 126.12468 * 180.02562 * 2 1 3 21 21 H 0.96998 * 126.04044 * 359.97233 * 20 2 1 22 22 H 1.08999 * 109.47159 * 90.00500 * 1 2 3 23 23 H 1.09004 * 109.47271 * 210.00218 * 1 2 3 24 24 H 1.09002 * 109.47252 * 329.99914 * 1 2 3 25 25 H 1.07995 * 126.03787 * 0.02562 * 3 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 27 27 H 1.00902 * 111.00292 * 176.04974 * 15 5 4 28 28 H 1.08999 * 115.54965 * 9.33325 * 16 15 5 29 29 H 1.09003 * 117.49493 * 0.02562 * 17 16 15 30 30 H 1.08997 * 117.50068 * 145.02098 * 17 16 15 31 31 H 1.08995 * 117.49784 * 252.50781 * 18 17 16 32 32 H 1.09004 * 117.49868 * 107.48367 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0006 5 6 4.8542 1.5394 -0.0013 6 1 4.6547 2.4344 -0.5908 7 6 5.1892 1.9344 1.4139 8 1 4.5794 1.5807 2.2320 9 6 6.2781 2.7423 1.6647 10 7 7.0209 3.1728 0.6685 11 14 6.6978 3.2257 3.4196 12 1 5.7145 2.6152 4.3499 13 1 8.0614 2.7414 3.7537 14 1 6.6518 4.7042 3.5504 15 7 5.9866 0.8096 -0.5871 16 6 6.2849 -0.4053 0.1829 17 6 7.7548 -0.7141 0.4741 18 6 6.9853 -1.5517 -0.5493 19 7 3.6333 -0.6524 -0.0066 20 7 2.3025 -1.0901 -0.0005 21 1 2.0055 -2.0134 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.9741 2.1210 0.0004 26 1 7.7867 3.7414 0.8450 27 1 6.8006 1.4016 -0.6581 28 1 5.5539 -0.6686 0.9474 29 1 8.5006 -0.0155 0.0946 30 1 7.9913 -1.1805 1.4304 31 1 6.7156 -2.5690 -0.2662 32 1 7.2248 -1.4043 -1.6025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = 78.331437 kcal Electronic energy + Delta-G solvation = -15163.744153 eV Core-core repulsion = 12739.798839 eV Total energy + Delta-G solvation = -2423.945314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92496 -38.58272 -35.77818 -33.71841 -32.45461 -31.29221 -28.14200 -27.58385 -24.93015 -23.03723 -21.97124 -21.22744 -20.09759 -18.49779 -17.99052 -16.70042 -16.35369 -15.91365 -15.63083 -14.71638 -14.55796 -14.27272 -13.74470 -13.49011 -13.43050 -13.12507 -12.95455 -12.71834 -12.65295 -12.27933 -12.14585 -11.84730 -11.38965 -11.09720 -10.78660 -10.60350 -9.87540 -9.31130 -8.79476 -8.03606 -6.31087 1.17259 1.37196 1.40297 1.50459 2.09186 2.26118 2.44186 3.08472 3.31675 3.84093 4.00110 4.14853 4.35744 4.38494 4.45617 4.76695 4.83483 4.86038 4.93850 5.06441 5.09890 5.16222 5.29798 5.33172 5.40270 5.56143 5.67865 5.91741 6.13070 6.59888 6.75141 6.86022 7.06673 7.16081 7.42173 8.87580 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.010996 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.971225 B = 2545.667863 C = 3316.475312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.090 3.910 3 C -0.304 4.304 4 C 0.100 3.900 5 C 0.279 3.721 6 H 0.031 0.969 7 C -0.540 4.540 8 H 0.038 0.962 9 C 0.033 3.967 10 N -0.911 5.911 11 Si 0.953 3.047 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.275 1.275 15 N -0.658 5.658 16 C 0.070 3.930 17 C -0.218 4.218 18 C -0.167 4.167 19 N -0.313 5.313 20 N -0.485 5.485 21 H 0.443 0.557 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.268 0.732 27 H 0.349 0.651 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -6.747 -0.515 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 C -0.334 4.334 4 C -0.067 4.067 5 C 0.169 3.831 6 H 0.049 0.951 7 C -0.581 4.581 8 H 0.057 0.943 9 C -0.168 4.168 10 N -0.551 5.551 11 Si 0.779 3.221 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.200 1.200 15 N -0.290 5.290 16 C -0.042 4.042 17 C -0.257 4.257 18 C -0.205 4.205 19 N -0.136 5.136 20 N -0.194 5.194 21 H 0.289 0.711 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.159 0.841 26 H 0.077 0.923 27 H 0.171 0.829 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.699 -7.978 -1.059 11.851 hybrid contribution 0.424 1.227 1.638 2.090 sum -8.275 -6.751 0.580 10.696 Atomic orbital electron populations 1.20543 0.83839 1.05055 1.04541 1.21599 0.96178 0.86754 0.99411 1.21313 0.91851 1.00072 1.20131 1.22704 0.96477 0.91764 0.95732 1.17494 0.83899 0.88690 0.93031 0.95075 1.21645 1.12295 1.31065 0.93057 0.94318 1.25538 0.95689 0.94924 1.00622 1.69799 1.17901 1.35370 1.31986 0.85589 0.77803 0.78091 0.80636 1.20105 1.20601 1.20029 1.60675 1.10929 1.07784 1.49591 1.21963 0.92226 0.92657 0.97400 1.23264 0.97197 1.04890 1.00351 1.22990 1.04481 0.96118 0.96952 1.77407 0.96179 1.12728 1.27293 1.46454 1.04119 1.08580 1.60290 0.71119 0.88703 0.89136 0.88988 0.84075 0.92254 0.82891 0.89120 0.90531 0.89374 0.88358 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.43 71.23 0.74 -0.72 16 2 C 0.09 2.79 7.21 41.40 0.30 3.09 16 3 C -0.30 -12.18 10.65 21.99 0.23 -11.94 16 4 C 0.10 4.73 5.82 43.10 0.25 4.98 16 5 C 0.28 14.83 2.94 43.42 0.13 14.95 16 6 H 0.03 1.79 8.14 -2.38 -0.02 1.78 16 7 C -0.54 -30.11 7.60 25.60 0.19 -29.91 16 8 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 9 C 0.03 1.79 5.38 84.66 0.46 2.25 16 10 N -0.91 -50.53 11.53 21.45 0.25 -50.28 16 11 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 N -0.66 -33.73 6.67 -477.17 -3.18 -36.91 16 16 C 0.07 3.27 4.22 44.92 0.19 3.46 16 17 C -0.22 -9.19 10.23 30.60 0.31 -8.88 16 18 C -0.17 -6.57 10.46 30.60 0.32 -6.25 16 19 N -0.31 -13.67 9.81 -47.39 -0.47 -14.13 16 20 N -0.48 -15.84 7.36 -48.00 -0.35 -16.20 16 21 H 0.44 10.62 8.96 -213.33 -1.91 8.70 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.14 5.35 8.06 -2.91 -0.02 5.32 16 26 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 27 H 0.35 18.92 6.59 -89.69 -0.59 18.33 16 28 H 0.09 4.63 5.91 -2.39 -0.01 4.61 16 29 H 0.08 3.33 8.09 -2.39 -0.02 3.31 16 30 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -64.49 271.81 0.03 -64.46 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -1.37 Total: 36.20 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.13 Total: -28.97 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -3.75 Total: -117.52 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.49 0.03 -64.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.790 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds