Wall clock time and date at job start Mon Mar 30 2020 02:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35705 * 126.21930 * 2 1 4 4 N 1.40798 * 126.06943 * 359.97438 * 3 2 1 5 5 C 1.40224 * 107.86071 * 180.02562 * 3 2 1 6 6 N 1.30861 * 108.36709 * 0.02562 * 5 3 2 7 7 N 1.35968 * 126.22445 * 180.02562 * 2 1 3 8 8 C 1.46494 * 126.07136 * 359.97347 * 7 2 1 9 9 H 1.08999 * 109.47401 * 0.02562 * 8 7 2 10 10 C 1.50703 * 109.47080 * 240.00134 * 8 7 2 11 11 H 1.08000 * 120.00005 * 265.11321 * 10 8 7 12 12 C 1.37879 * 119.99865 * 85.11602 * 10 8 7 13 13 N 1.31513 * 120.00197 * 5.07374 * 12 10 8 14 14 Si 1.86791 * 119.99793 * 185.07464 * 12 10 8 15 15 H 1.48497 * 109.47376 * 89.99652 * 14 12 10 16 16 H 1.48507 * 109.47225 * 209.99891 * 14 12 10 17 17 H 1.48506 * 109.47438 * 329.99485 * 14 12 10 18 18 C 1.53002 * 109.47055 * 120.00219 * 8 7 2 19 19 C 1.53000 * 117.49901 * 254.03137 * 18 8 7 20 20 C 1.52999 * 117.49859 * 185.37083 * 18 8 7 21 21 H 1.09005 * 109.47005 * 269.99974 * 1 2 3 22 22 H 1.08995 * 109.47203 * 29.99691 * 1 2 3 23 23 H 1.08998 * 109.47087 * 150.00422 * 1 2 3 24 24 H 0.96997 * 120.00351 * 0.02562 * 4 3 2 25 25 H 0.97006 * 119.99909 * 179.97438 * 4 3 2 26 26 H 1.07999 * 125.81742 * 179.97438 * 5 3 2 27 27 H 0.96991 * 120.00327 * 180.02562 * 13 12 10 28 28 H 1.08996 * 115.55059 * 39.70336 * 18 8 7 29 29 H 1.09006 * 117.49859 * 0.02562 * 19 18 8 30 30 H 1.09004 * 117.50050 * 145.01556 * 19 18 8 31 31 H 1.09000 * 117.50266 * 214.97817 * 20 18 8 32 32 H 1.08997 * 117.49796 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3089 1.0948 0.0000 4 7 1.8806 2.4361 -0.0005 5 6 3.6398 0.6532 -0.0006 6 7 3.6400 -0.6554 -0.0015 7 7 2.3105 -1.0969 -0.0005 8 6 1.8651 -2.4924 -0.0006 9 1 0.7756 -2.5261 -0.0006 10 6 2.3895 -3.1872 1.2296 11 1 3.3106 -3.7490 1.1812 12 6 1.6934 -3.1056 2.4170 13 7 0.5230 -2.5069 2.4533 14 14 2.4126 -3.8456 3.9740 15 1 3.2345 -2.8254 4.6731 16 1 1.3111 -4.2898 4.8656 17 1 3.2639 -5.0102 3.6212 18 6 2.3966 -3.1974 -1.2501 19 6 1.3991 -3.4956 -2.3713 20 6 1.9355 -4.6346 -1.5005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 0.9328 2.6426 -0.0005 25 1 2.5333 3.1537 -0.0001 26 1 4.5154 1.2853 -0.0011 27 1 0.0335 -2.4492 3.2886 28 1 3.4153 -2.9383 -1.5386 29 1 0.3642 -3.1892 -2.2188 30 1 1.7616 -3.4329 -3.3973 31 1 2.6506 -5.3209 -1.9540 32 1 1.2537 -5.0780 -0.7748 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144312.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:43 Heat of formation + Delta-G solvation = 73.799671 kcal Electronic energy + Delta-G solvation = -15321.051739 eV Core-core repulsion = 12896.909913 eV Total energy + Delta-G solvation = -2424.141826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.58758 -38.37977 -35.25219 -34.64483 -33.14055 -31.08298 -28.28466 -26.85739 -25.40043 -23.14000 -22.39597 -20.67096 -20.33016 -18.55296 -17.65064 -16.80314 -16.53598 -15.93970 -15.71456 -15.40343 -14.66954 -14.57868 -13.84664 -13.44896 -13.41279 -13.24553 -12.92534 -12.61256 -12.55713 -12.29849 -11.99768 -11.61522 -11.33493 -11.07087 -10.99963 -10.84699 -10.56707 -9.60351 -8.30149 -7.63138 -6.39927 1.32569 1.37800 1.45499 1.51232 2.17606 2.33737 2.37836 3.12636 3.20452 3.55254 3.95103 4.18066 4.24502 4.32243 4.47812 4.56706 4.65669 4.81722 4.89092 4.89267 5.09814 5.13262 5.16781 5.34755 5.43914 5.57747 5.69591 5.94596 6.12851 6.69234 6.81051 7.07490 7.26529 7.36869 7.55611 8.76796 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.012923 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.259498 B = 2166.179469 C = 2844.724155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.013 4.013 3 C 0.022 3.978 4 N -0.869 5.869 5 C -0.036 4.036 6 N -0.319 5.319 7 N -0.322 5.322 8 C 0.301 3.699 9 H 0.066 0.934 10 C -0.522 4.522 11 H 0.049 0.951 12 C 0.034 3.966 13 N -0.892 5.892 14 Si 0.952 3.048 15 H -0.288 1.288 16 H -0.274 1.274 17 H -0.266 1.266 18 C -0.164 4.164 19 C -0.174 4.174 20 C -0.153 4.153 21 H 0.056 0.944 22 H 0.089 0.911 23 H 0.052 0.948 24 H 0.396 0.604 25 H 0.401 0.599 26 H 0.190 0.810 27 H 0.268 0.732 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 4.483 -5.636 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.144 4.144 3 C -0.087 4.087 4 N -0.419 5.419 5 C -0.221 4.221 6 N -0.145 5.145 7 N -0.109 5.109 8 C 0.204 3.796 9 H 0.084 0.916 10 C -0.561 4.561 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.528 5.528 14 Si 0.778 3.222 15 H -0.214 1.214 16 H -0.199 1.199 17 H -0.190 1.190 18 C -0.183 4.183 19 C -0.211 4.211 20 C -0.190 4.190 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.071 0.929 24 H 0.224 0.776 25 H 0.230 0.770 26 H 0.207 0.793 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.620 3.216 -5.537 6.433 hybrid contribution -0.113 0.764 1.174 1.405 sum -0.733 3.979 -4.363 5.951 Atomic orbital electron populations 1.19987 0.87326 1.02120 1.01787 1.20870 0.95098 0.87389 1.11089 1.17531 0.91612 0.86661 1.12871 1.41212 1.09026 1.00765 1.90902 1.23665 0.97010 0.92476 1.08935 1.76953 1.01416 1.12326 1.23803 1.50040 1.01480 1.06766 1.52601 1.18588 0.95027 0.73999 0.91952 0.91635 1.21274 1.08573 1.31325 0.94931 0.93315 1.25704 0.94758 0.94829 1.01663 1.69960 1.12662 1.42407 1.27784 0.85656 0.78393 0.78681 0.79520 1.21414 1.19874 1.19000 1.22435 0.98443 1.00158 0.97255 1.23079 0.98628 1.03476 0.95938 1.22793 1.03481 0.90702 1.02064 0.92480 0.89213 0.92905 0.77611 0.77032 0.79279 0.92333 0.90065 0.89330 0.87556 0.87547 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.06 9.78 71.24 0.70 -1.36 16 2 C -0.01 -0.56 6.98 41.33 0.29 -0.28 16 3 C 0.02 0.88 7.22 37.59 0.27 1.15 16 4 N -0.87 -25.18 9.19 -51.74 -0.48 -25.65 16 5 C -0.04 -1.51 12.03 85.32 1.03 -0.48 16 6 N -0.32 -15.75 12.41 -56.78 -0.70 -16.45 16 7 N -0.32 -15.94 3.29 -316.78 -1.04 -16.99 16 8 C 0.30 15.10 2.62 44.25 0.12 15.21 16 9 H 0.07 3.47 5.91 -2.39 -0.01 3.46 16 10 C -0.52 -28.68 8.35 25.60 0.21 -28.46 16 11 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 12 C 0.03 1.87 5.45 84.66 0.46 2.33 16 13 N -0.89 -48.81 12.92 21.45 0.28 -48.53 16 14 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 C -0.16 -7.07 5.31 -10.79 -0.06 -7.13 16 19 C -0.17 -6.05 10.18 30.62 0.31 -5.74 16 20 C -0.15 -5.58 10.01 30.62 0.31 -5.27 16 21 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 22 H 0.09 2.68 7.61 -2.39 -0.02 2.66 16 23 H 0.05 2.06 7.13 -2.39 -0.02 2.04 16 24 H 0.40 10.03 8.22 -92.71 -0.76 9.27 16 25 H 0.40 9.40 8.96 -92.70 -0.83 8.57 16 26 H 0.19 6.31 8.06 -2.91 -0.02 6.29 16 27 H 0.27 13.97 8.31 -92.72 -0.77 13.20 16 28 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 29 H 0.09 3.04 8.08 -2.38 -0.02 3.02 16 30 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -63.44 277.41 3.26 -60.18 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.45 Total: 31.58 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 3.64 Total: -30.03 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -1.95 Total: -107.63 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.44 3.26 -60.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144312.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.981 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds