Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.52997 * 109.47259 * 239.99425 * 2 1 3 5 5 C 1.50701 * 109.47001 * 119.99591 * 2 1 3 6 6 C 1.38649 * 120.32034 * 75.00324 * 5 2 1 7 7 C 1.40091 * 118.60181 * 180.02562 * 6 5 2 8 8 N 1.38532 * 120.45775 * 179.97438 * 7 6 5 9 9 N 1.32553 * 119.09082 * 359.97438 * 7 6 5 10 10 C 1.33432 * 120.55999 * 359.97438 * 9 7 6 11 11 C 1.41574 * 119.25178 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00592 * 180.02562 * 11 10 9 13 13 C 1.40059 * 119.99785 * 359.72381 * 11 10 9 14 14 N 1.30694 * 119.99953 * 0.27958 * 13 11 10 15 15 Si 1.86798 * 120.00390 * 180.27390 * 13 11 10 16 16 H 1.48510 * 109.46922 * 89.99994 * 15 13 11 17 17 H 1.48501 * 109.47447 * 210.00351 * 15 13 11 18 18 H 1.48499 * 109.46902 * 330.00691 * 15 13 11 19 19 N 1.32064 * 120.32447 * 255.27299 * 5 2 1 20 20 H 1.09001 * 109.46851 * 300.00298 * 1 2 3 21 21 H 1.09002 * 109.47060 * 60.00015 * 1 2 3 22 22 H 1.08997 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46898 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46328 * 299.99810 * 3 2 1 25 25 H 1.08991 * 109.46936 * 59.99770 * 3 2 1 26 26 H 1.08999 * 109.47419 * 300.00430 * 4 2 1 27 27 H 1.09002 * 109.46628 * 60.00295 * 4 2 1 28 28 H 1.08998 * 109.47208 * 179.97438 * 4 2 1 29 29 H 1.07994 * 120.69863 * 0.02562 * 6 5 2 30 30 H 0.96997 * 120.00090 * 180.02562 * 8 7 6 31 31 H 0.97001 * 119.99370 * 0.02562 * 8 7 6 32 32 H 0.96996 * 120.00343 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2305 6 6 1.9736 -2.0931 1.3135 7 6 2.4501 -2.7161 2.4743 8 7 2.4094 -4.0953 2.5982 9 7 2.9404 -1.9679 3.4524 10 6 2.9811 -0.6394 3.3351 11 6 3.5111 0.1330 4.3967 12 1 3.5495 1.2092 4.3148 13 6 3.9798 -0.4983 5.5558 14 7 3.9330 -1.8006 5.6551 15 14 4.6721 0.5211 6.9597 16 1 3.5777 0.8804 7.8971 17 1 5.7036 -0.2664 7.6816 18 1 5.2852 1.7598 6.4166 19 7 2.5278 -0.0215 2.2425 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 1.6767 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1391 28 1 3.1300 -0.7210 -1.2494 29 1 1.5691 -2.6775 0.5004 30 1 2.7408 -4.5197 3.4050 31 1 2.0495 -4.6365 1.8781 32 1 4.2579 -2.2379 6.4576 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = 28.851577 kcal Electronic energy + Delta-G solvation = -15111.748386 eV Core-core repulsion = 12685.657465 eV Total energy + Delta-G solvation = -2426.090922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.11135 -36.25186 -34.23560 -33.00218 -30.02982 -28.99460 -27.00054 -26.75417 -25.69804 -22.58262 -21.29984 -19.00175 -17.17116 -16.46715 -15.52724 -14.88561 -14.27948 -13.89021 -13.66434 -13.57107 -12.91341 -12.83298 -12.74266 -11.81503 -11.67399 -11.29878 -11.23811 -11.12973 -10.61523 -10.51813 -10.49192 -10.30078 -10.15396 -10.04477 -9.23658 -8.73668 -7.97168 -7.18603 -7.01737 -6.38299 -4.59964 2.80874 3.11504 3.15321 3.17666 3.32199 3.97545 4.72684 4.80139 5.23635 5.44058 5.54218 5.91148 6.00753 6.09197 6.16211 6.25553 6.34467 6.45713 6.47809 6.49004 6.51253 6.72514 6.84049 6.87718 7.07325 7.20723 7.33044 7.63848 8.21083 8.27243 8.58961 8.74952 8.91499 9.42968 10.29321 10.54174 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.009336 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.604439 B = 2998.277203 C = 3679.814246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.016 4.016 3 C -0.119 4.119 4 C -0.131 4.131 5 C 0.219 3.781 6 C -0.412 4.412 7 C 0.430 3.570 8 N -0.860 5.860 9 N -0.560 5.560 10 C 0.426 3.574 11 C -0.407 4.407 12 H 0.090 0.910 13 C 0.069 3.931 14 N -0.715 5.715 15 Si 0.914 3.086 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.260 1.260 19 N -0.612 5.612 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.394 0.606 31 H 0.391 0.609 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -0.595 -6.205 6.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 C -0.177 4.177 4 C -0.189 4.189 5 C 0.067 3.933 6 C -0.443 4.443 7 C 0.181 3.819 8 N -0.405 5.405 9 N -0.288 5.288 10 C 0.187 3.813 11 C -0.443 4.443 12 H 0.108 0.892 13 C -0.157 4.157 14 N -0.338 5.338 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.184 1.184 19 N -0.333 5.333 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.223 0.777 31 H 0.218 0.782 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.411 -0.127 -5.248 5.777 hybrid contribution -0.062 -0.781 -0.001 0.783 sum -2.473 -0.908 -5.249 5.873 Atomic orbital electron populations 1.21764 0.94329 1.01473 1.01114 1.19349 0.94969 0.95479 0.91953 1.21587 1.01080 0.94504 1.00511 1.21816 1.01007 1.00053 0.95980 1.20558 0.90412 0.89653 0.92720 1.21059 1.25645 0.95896 1.01744 1.18748 0.87915 0.85515 0.89688 1.41956 1.72536 1.03577 1.22456 1.68951 1.25765 1.06743 1.27308 1.19639 0.87415 0.85087 0.89153 1.19266 1.33640 0.94528 0.96891 0.89153 1.26054 0.94889 0.95113 0.99643 1.70165 1.29203 1.09158 1.25260 0.86229 0.79085 0.80540 0.80350 1.19445 1.20237 1.18421 1.68454 1.21834 1.40188 1.02836 0.92690 0.93024 0.92863 0.92885 0.94308 0.91663 0.92591 0.93132 0.92906 0.88462 0.77740 0.78163 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.41 37.16 0.31 -1.78 16 2 C -0.02 -0.30 0.88 -155.66 -0.14 -0.44 16 3 C -0.12 -2.12 7.84 37.16 0.29 -1.83 16 4 C -0.13 -2.06 8.10 37.16 0.30 -1.76 16 5 C 0.22 5.12 5.57 -82.34 -0.46 4.66 16 6 C -0.41 -9.46 9.10 -38.74 -0.35 -9.81 16 7 C 0.43 10.60 7.82 -154.99 -1.21 9.39 16 8 N -0.86 -16.73 9.06 31.25 0.28 -16.44 16 9 N -0.56 -15.81 7.91 -11.88 -0.09 -15.90 16 10 C 0.43 12.36 7.37 -158.33 -1.17 11.19 16 11 C -0.41 -11.46 9.37 -37.63 -0.35 -11.81 16 12 H 0.09 2.45 7.85 -52.49 -0.41 2.04 16 13 C 0.07 1.79 5.50 -17.35 -0.10 1.70 16 14 N -0.72 -19.18 11.42 55.55 0.63 -18.55 16 15 Si 0.91 19.06 29.56 -169.99 -5.02 14.04 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 N -0.61 -16.39 9.10 -8.96 -0.08 -16.48 16 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.26 7.88 -51.93 -0.41 0.85 16 26 H 0.06 0.85 6.78 -51.93 -0.35 0.50 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.96 6.82 -52.49 -0.36 1.60 16 30 H 0.39 7.49 8.95 -40.82 -0.37 7.12 16 31 H 0.39 6.13 8.84 -40.82 -0.36 5.76 16 32 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 270.69 15.07 4.08 4.08 Total: -1.00 -30.94 270.69 -7.42 -38.36 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.35 Total: 11.39 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.87 Total: -0.50 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.74 Total: -67.37 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.94 -7.42 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.215 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds