Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 C 1.52997 * 109.47259 * 239.99425 * 2 1 3 5 5 C 1.50701 * 109.47001 * 119.99591 * 2 1 3 6 6 C 1.38649 * 120.32034 * 75.00324 * 5 2 1 7 7 C 1.40091 * 118.60181 * 180.02562 * 6 5 2 8 8 N 1.38532 * 120.45775 * 179.97438 * 7 6 5 9 9 N 1.32553 * 119.09082 * 359.97438 * 7 6 5 10 10 C 1.33432 * 120.55999 * 359.97438 * 9 7 6 11 11 C 1.41574 * 119.25178 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00592 * 180.02562 * 11 10 9 13 13 C 1.40059 * 119.99785 * 359.72381 * 11 10 9 14 14 N 1.30694 * 119.99953 * 0.27958 * 13 11 10 15 15 Si 1.86798 * 120.00390 * 180.27390 * 13 11 10 16 16 H 1.48510 * 109.46922 * 89.99994 * 15 13 11 17 17 H 1.48501 * 109.47447 * 210.00351 * 15 13 11 18 18 H 1.48499 * 109.46902 * 330.00691 * 15 13 11 19 19 N 1.32064 * 120.32447 * 255.27299 * 5 2 1 20 20 H 1.09001 * 109.46851 * 300.00298 * 1 2 3 21 21 H 1.09002 * 109.47060 * 60.00015 * 1 2 3 22 22 H 1.08997 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46898 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.46328 * 299.99810 * 3 2 1 25 25 H 1.08991 * 109.46936 * 59.99770 * 3 2 1 26 26 H 1.08999 * 109.47419 * 300.00430 * 4 2 1 27 27 H 1.09002 * 109.46628 * 60.00295 * 4 2 1 28 28 H 1.08998 * 109.47208 * 179.97438 * 4 2 1 29 29 H 1.07994 * 120.69863 * 0.02562 * 6 5 2 30 30 H 0.96997 * 120.00090 * 180.02562 * 8 7 6 31 31 H 0.97001 * 119.99370 * 0.02562 * 8 7 6 32 32 H 0.96996 * 120.00343 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2305 6 6 1.9736 -2.0931 1.3135 7 6 2.4501 -2.7161 2.4743 8 7 2.4094 -4.0953 2.5982 9 7 2.9404 -1.9679 3.4524 10 6 2.9811 -0.6394 3.3351 11 6 3.5111 0.1330 4.3967 12 1 3.5495 1.2092 4.3148 13 6 3.9798 -0.4983 5.5558 14 7 3.9330 -1.8006 5.6551 15 14 4.6721 0.5211 6.9597 16 1 3.5777 0.8804 7.8971 17 1 5.7036 -0.2664 7.6816 18 1 5.2852 1.7598 6.4166 19 7 2.5278 -0.0215 2.2425 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6768 1.9563 0.8899 26 1 1.6767 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1391 28 1 3.1300 -0.7210 -1.2494 29 1 1.5691 -2.6775 0.5004 30 1 2.7408 -4.5197 3.4050 31 1 2.0495 -4.6365 1.8781 32 1 4.2579 -2.2379 6.4576 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = 8.642505 kcal Electronic energy + Delta-G solvation = -15112.624718 eV Core-core repulsion = 12685.657465 eV Total energy + Delta-G solvation = -2426.967253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95222 -37.81821 -36.08977 -34.86247 -31.91371 -30.82667 -28.64254 -28.03774 -27.41086 -24.35052 -23.21018 -20.69006 -18.97347 -18.27558 -17.36083 -16.53026 -16.01542 -15.57170 -15.31619 -15.14146 -14.68236 -14.48942 -14.32018 -13.25207 -13.07495 -12.91819 -12.79620 -12.61867 -12.48596 -12.13199 -12.05893 -11.76596 -11.71712 -11.69604 -11.07985 -10.62081 -9.89740 -9.15280 -8.82114 -8.31857 -6.65756 0.94010 1.36291 1.40549 1.54080 1.57200 2.23598 2.86032 3.06429 3.71505 3.99403 4.05657 4.31681 4.46947 4.55409 4.78470 4.85667 4.89557 4.97404 4.99419 5.07423 5.09098 5.13608 5.26393 5.30903 5.47128 5.54714 5.67247 5.88747 6.18344 6.46900 6.71232 6.88285 7.04437 7.58659 8.39407 8.57336 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.009336 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.604439 B = 2998.277203 C = 3679.814246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.021 4.021 3 C -0.114 4.114 4 C -0.124 4.124 5 C 0.204 3.796 6 C -0.411 4.411 7 C 0.410 3.590 8 N -0.840 5.840 9 N -0.594 5.594 10 C 0.396 3.604 11 C -0.447 4.447 12 H 0.083 0.917 13 C 0.026 3.974 14 N -0.748 5.748 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.263 1.263 18 H -0.259 1.259 19 N -0.638 5.638 20 H 0.033 0.967 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.411 0.589 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -0.741 -7.363 8.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.171 4.171 4 C -0.181 4.181 5 C 0.053 3.947 6 C -0.442 4.442 7 C 0.160 3.840 8 N -0.386 5.386 9 N -0.323 5.323 10 C 0.156 3.844 11 C -0.483 4.483 12 H 0.101 0.899 13 C -0.197 4.197 14 N -0.371 5.371 15 Si 0.814 3.186 16 H -0.186 1.186 17 H -0.187 1.187 18 H -0.182 1.182 19 N -0.361 5.361 20 H 0.052 0.948 21 H 0.107 0.893 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.147 0.853 30 H 0.226 0.774 31 H 0.242 0.758 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.998 -0.335 -6.463 7.133 hybrid contribution 0.049 -0.815 0.237 0.850 sum -2.949 -1.150 -6.226 6.985 Atomic orbital electron populations 1.21726 0.92333 1.02013 1.01944 1.19576 0.96480 0.95385 0.90784 1.21529 0.99786 0.94595 1.01191 1.21774 1.00122 1.00534 0.95716 1.21510 0.89061 0.90542 0.93538 1.21399 1.24649 0.96185 1.01918 1.19219 0.87748 0.87134 0.89857 1.41821 1.71656 1.01884 1.23261 1.68899 1.27513 1.06851 1.29052 1.20070 0.88176 0.85958 0.90232 1.19557 1.35781 0.94462 0.98514 0.89857 1.26973 0.94593 0.96391 1.01726 1.70231 1.29626 1.10771 1.26428 0.85033 0.78524 0.78614 0.76379 1.18643 1.18740 1.18246 1.68527 1.23220 1.40846 1.03473 0.94760 0.89286 0.92473 0.94845 0.90379 0.94121 0.91935 0.89577 0.94310 0.85293 0.77395 0.75805 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.64 8.41 71.98 0.61 -3.04 16 2 C -0.02 -0.74 0.88 -52.93 -0.05 -0.79 16 3 C -0.11 -3.92 7.84 71.98 0.56 -3.36 16 4 C -0.12 -3.49 8.10 71.98 0.58 -2.91 16 5 C 0.20 9.54 5.57 42.62 0.24 9.78 16 6 C -0.41 -18.52 9.10 22.82 0.21 -18.31 16 7 C 0.41 20.21 7.82 133.41 1.04 21.25 16 8 N -0.84 -31.86 9.06 -55.04 -0.50 -32.36 16 9 N -0.59 -34.46 7.91 -191.50 -1.51 -35.98 16 10 C 0.40 23.88 7.37 135.16 1.00 24.87 16 11 C -0.45 -26.23 9.37 23.53 0.22 -26.01 16 12 H 0.08 4.77 7.85 -2.91 -0.02 4.74 16 13 C 0.03 1.38 5.50 85.30 0.47 1.84 16 14 N -0.75 -40.97 11.42 21.84 0.25 -40.72 16 15 Si 1.00 39.68 29.56 68.60 2.03 41.71 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 N -0.64 -35.34 9.10 -182.26 -1.66 -37.00 16 20 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 25 H 0.04 1.57 7.88 -2.39 -0.02 1.55 16 26 H 0.06 1.67 6.78 -2.39 -0.02 1.65 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.13 4.86 6.82 -2.91 -0.02 4.84 16 30 H 0.40 14.88 8.95 -92.71 -0.83 14.05 16 31 H 0.41 12.04 8.84 -92.71 -0.82 11.22 16 32 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16 Total: -1.00 -69.93 270.69 2.97 -66.95 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.51 Total: 34.06 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.88 Total: 3.33 kcal Atomic # 7 Polarization: -142.63 SS G_CDS: -3.42 Total: -146.05 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -69.93 2.97 -66.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.596 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds