Wall clock time and date at job start Mon Mar 30 2020 02:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35971 * 126.22268 * 2 1 4 4 H 0.97002 * 126.06819 * 0.02562 * 3 2 1 5 5 N 1.40072 * 107.85926 * 180.02562 * 3 2 1 6 6 C 1.30859 * 108.35813 * 359.76411 * 5 3 2 7 7 C 1.35704 * 126.22449 * 180.02562 * 2 1 3 8 8 N 1.40797 * 126.07002 * 359.93770 * 7 2 1 9 9 C 1.46503 * 119.99963 * 179.72881 * 8 7 2 10 10 H 1.09001 * 109.47148 * 35.27767 * 9 8 7 11 11 C 1.50698 * 109.47035 * 155.27536 * 9 8 7 12 12 H 1.08008 * 120.00040 * 64.52937 * 11 9 8 13 13 C 1.37879 * 120.00078 * 244.53229 * 11 9 8 14 14 N 1.31513 * 119.99781 * 5.12377 * 13 11 9 15 15 Si 1.86803 * 119.99752 * 185.12225 * 13 11 9 16 16 H 1.48498 * 109.46849 * 90.00063 * 15 13 11 17 17 H 1.48506 * 109.46839 * 210.00018 * 15 13 11 18 18 H 1.48497 * 109.47152 * 330.00042 * 15 13 11 19 19 C 1.53002 * 109.47001 * 275.27636 * 9 8 7 20 20 C 1.53004 * 117.49716 * 243.12091 * 19 9 8 21 21 C 1.52996 * 117.49718 * 174.49800 * 19 9 8 22 22 H 1.08990 * 109.46845 * 269.96933 * 1 2 3 23 23 H 1.08991 * 109.47085 * 29.97371 * 1 2 3 24 24 H 1.09000 * 109.46444 * 149.96818 * 1 2 3 25 25 H 1.08007 * 125.81700 * 180.24534 * 6 5 3 26 26 H 0.96998 * 119.99748 * 0.02562 * 8 7 2 27 27 H 0.96996 * 119.99444 * 179.97438 * 14 13 11 28 28 H 1.08995 * 115.54936 * 28.82785 * 19 9 8 29 29 H 1.09000 * 117.49524 * 359.97438 * 20 19 9 30 30 H 1.08992 * 117.49581 * 145.02138 * 20 19 9 31 31 H 1.08997 * 117.49667 * 214.97764 * 21 19 9 32 32 H 1.09001 * 117.49810 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3105 1.0969 0.0000 4 1 2.0155 2.0210 0.0004 5 7 3.6399 0.6556 -0.0006 6 6 3.6398 -0.6530 0.0042 7 6 2.3090 -1.0947 -0.0005 8 7 1.8808 -2.4360 0.0001 9 6 2.8667 -3.5197 -0.0065 10 1 3.7349 -3.2246 0.5827 11 6 2.2533 -4.7604 0.5895 12 1 1.4231 -5.2433 0.0954 13 6 2.7518 -5.2792 1.7657 14 7 3.6946 -4.6370 2.4202 15 14 2.0881 -6.8943 2.4295 16 1 2.8885 -8.0199 1.8839 17 1 2.1791 -6.8950 3.9117 18 1 0.6693 -7.0518 2.0206 19 6 3.3002 -3.8058 -1.4456 20 6 2.9847 -5.1899 -2.0165 21 6 4.4252 -4.8213 -1.6558 22 1 -0.3633 -0.0006 1.0276 23 1 -0.3633 0.8901 -0.5134 24 1 -0.3632 -0.8897 -0.5143 25 1 4.5156 -1.2851 0.0088 26 1 0.9331 -2.6425 0.0006 27 1 4.0450 -5.0018 3.2478 28 1 3.2543 -2.9572 -2.1280 29 1 2.4686 -5.8966 -1.3667 30 1 2.7310 -5.2518 -3.0747 31 1 5.1191 -4.6409 -2.4768 32 1 4.8567 -5.2852 -0.7688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:17 Heat of formation + Delta-G solvation = 95.686842 kcal Electronic energy + Delta-G solvation = -15016.039755 eV Core-core repulsion = 12592.847028 eV Total energy + Delta-G solvation = -2423.192727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30578 -36.94483 -33.70599 -32.41135 -31.76987 -29.13998 -26.88895 -25.19220 -23.45017 -21.34711 -20.98557 -19.51165 -18.69591 -16.70687 -16.31726 -14.83889 -14.66428 -14.38935 -14.29178 -13.55638 -13.25846 -12.91465 -12.34437 -12.32207 -11.84359 -11.49831 -11.17270 -10.98285 -10.66618 -10.51389 -10.13882 -10.08561 -9.65776 -9.29234 -8.89266 -8.68945 -8.63261 -8.50319 -6.16691 -5.93474 -4.23506 2.54411 3.22832 3.31252 3.32892 3.54713 3.79667 4.30328 4.73773 5.01758 5.36538 5.42838 5.53971 5.77682 5.90785 5.95428 6.15323 6.19753 6.21874 6.39358 6.56011 6.62946 6.67546 7.06969 7.16061 7.29914 7.39692 7.52469 7.73970 8.01211 8.13936 8.35399 8.82845 8.95398 9.25813 9.44825 10.90943 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027596 B = 0.009129 C = 0.008181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.404043 B = 3066.425074 C = 3421.706543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.054 4.054 3 N -0.488 5.488 4 H 0.429 0.571 5 N -0.289 5.289 6 C 0.017 3.983 7 C 0.102 3.898 8 N -0.721 5.721 9 C 0.288 3.712 10 H 0.076 0.924 11 C -0.517 4.517 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.878 5.878 15 Si 0.892 3.108 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.177 0.823 26 H 0.382 0.618 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 4.985 -4.629 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.183 4.183 3 N -0.204 5.204 4 H 0.271 0.729 5 N -0.113 5.113 6 C -0.173 4.173 7 C -0.009 4.009 8 N -0.353 5.353 9 C 0.186 3.814 10 H 0.094 0.906 11 C -0.556 4.556 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.515 5.515 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.170 4.170 20 C -0.215 4.215 21 C -0.218 4.218 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.194 0.806 26 H 0.215 0.785 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.836 5.824 -4.451 7.859 hybrid contribution -1.228 -1.225 0.392 1.778 sum -4.064 4.600 -4.059 7.358 Atomic orbital electron populations 1.20020 0.88458 1.02124 1.01766 1.20039 0.93342 0.87012 1.17925 1.45624 1.03424 1.06981 1.64377 0.72927 1.76998 0.97728 1.12735 1.23886 1.23518 0.97358 0.91526 1.04871 1.17869 0.91597 0.87002 1.04455 1.45354 1.08225 0.99387 1.82326 1.18321 0.90192 0.84828 0.88057 0.90613 1.21095 1.17891 1.09303 1.07304 0.92215 1.25030 0.94693 0.97239 0.96065 1.69912 1.27314 1.37985 1.16261 0.86600 0.79518 0.83830 0.78106 1.20395 1.21213 1.19737 1.23142 1.01835 0.91085 1.00904 1.22952 0.98688 1.01215 0.98673 1.22676 0.91180 1.05807 1.02095 0.91914 0.92597 0.90941 0.80584 0.78477 0.92549 0.90825 0.87373 0.91901 0.91249 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.24 36.01 0.37 -0.51 16 2 C -0.05 -0.94 7.26 -81.66 -0.59 -1.54 16 3 N -0.49 -8.08 7.41 33.72 0.25 -7.83 16 4 H 0.43 5.44 8.96 -182.62 -1.64 3.80 16 5 N -0.29 -5.62 12.69 30.70 0.39 -5.23 16 6 C 0.02 0.34 11.15 -17.22 -0.19 0.15 16 7 C 0.10 2.08 6.90 -83.90 -0.58 1.51 16 8 N -0.72 -15.47 5.31 -53.45 -0.28 -15.76 16 9 C 0.29 6.77 2.65 -69.08 -0.18 6.58 16 10 H 0.08 2.02 5.97 -51.93 -0.31 1.71 16 11 C -0.52 -12.98 6.66 -34.44 -0.23 -13.21 16 12 H 0.06 1.49 6.93 -52.48 -0.36 1.12 16 13 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 14 N -0.88 -24.16 12.63 55.43 0.70 -23.46 16 15 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.15 -3.16 5.99 -90.62 -0.54 -3.71 16 20 C -0.18 -3.55 9.65 -26.73 -0.26 -3.81 16 21 C -0.18 -3.60 10.12 -26.73 -0.27 -3.88 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.96 7.61 -51.93 -0.40 0.57 16 25 H 0.18 3.59 7.45 -52.48 -0.39 3.20 16 26 H 0.38 7.84 7.98 -40.82 -0.33 7.51 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.11 2.30 5.98 -51.93 -0.31 1.99 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 273.00 15.07 4.11 4.11 Total: -1.00 -28.03 273.00 -7.83 -35.86 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.40 Total: 13.67 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.58 Total: -16.55 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 1.06 Total: -52.28 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.03 -7.83 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.544 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds