Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47310 * 2 1 4 4 N 1.29110 * 126.00672 * 90.02227 * 3 2 1 5 5 N 1.29017 * 110.25416 * 180.02562 * 4 3 2 6 6 C 1.32910 * 108.63929 * 0.02846 * 5 4 3 7 7 C 1.34397 * 126.00310 * 270.03067 * 3 2 1 8 8 C 1.50528 * 129.25877 * 359.74900 * 7 3 2 9 9 C 1.53437 * 108.32628 * 196.54799 * 8 7 3 10 10 H 1.08998 * 109.46066 * 70.30122 * 9 8 7 11 11 C 1.50703 * 109.45758 * 190.25736 * 9 8 7 12 12 H 1.07998 * 120.00103 * 5.54674 * 11 9 8 13 13 C 1.37880 * 119.99779 * 185.54415 * 11 9 8 14 14 N 1.31518 * 120.00030 * 9.54604 * 13 11 9 15 15 Si 1.86797 * 119.99788 * 189.53792 * 13 11 9 16 16 H 1.48507 * 109.46946 * 94.99627 * 15 13 11 17 17 H 1.48507 * 109.47205 * 214.99481 * 15 13 11 18 18 H 1.48498 * 109.47504 * 334.99548 * 15 13 11 19 19 C 1.53108 * 109.54958 * 310.28026 * 9 8 7 20 20 C 1.50601 * 129.16254 * 179.87704 * 6 5 4 21 21 H 1.08999 * 109.46540 * 300.00155 * 1 2 3 22 22 H 1.08998 * 109.47027 * 59.99878 * 1 2 3 23 23 H 1.08989 * 109.47167 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46921 * 240.00520 * 2 1 3 25 25 H 1.08997 * 109.47548 * 120.00163 * 2 1 3 26 26 H 1.08998 * 109.69793 * 316.24873 * 8 7 3 27 27 H 1.09002 * 109.69428 * 76.79438 * 8 7 3 28 28 H 0.97004 * 119.99626 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.45474 * 310.03457 * 19 9 8 30 30 H 1.09004 * 109.45538 * 190.10516 * 19 9 8 31 31 H 1.09004 * 109.69376 * 76.78193 * 20 6 5 32 32 H 1.09010 * 109.72116 * 316.22736 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2718 2.0967 1.0444 5 7 2.6851 3.2676 0.6942 6 6 2.7060 3.3312 -0.6332 7 6 2.2812 2.1263 -1.0872 8 6 2.1576 1.7638 -2.5430 9 6 2.9559 2.7851 -3.3639 10 1 4.0220 2.6335 -3.1947 11 6 2.6493 2.6021 -4.8281 12 1 1.8906 1.8984 -5.1370 13 6 3.3374 3.3333 -5.7731 14 7 4.3835 4.0471 -5.4186 15 14 2.7838 3.3096 -7.5570 16 1 1.8987 4.4736 -7.8160 17 1 3.9718 3.3838 -8.4450 18 1 2.0408 2.0528 -7.8282 19 6 2.5681 4.2028 -2.9349 20 6 3.1072 4.4772 -1.5243 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.5604 0.7646 -2.7083 27 1 1.1094 1.7911 -2.8406 28 1 4.8678 4.5612 -6.0836 29 1 1.4823 4.2979 -2.9352 30 1 2.9954 4.9229 -3.6328 31 1 4.1939 4.5568 -1.5535 32 1 2.6811 5.4056 -1.1439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261178749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = 56.721354 kcal Electronic energy + Delta-G solvation = -15200.828232 eV Core-core repulsion = 12775.945834 eV Total energy + Delta-G solvation = -2424.882398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.30836 -38.17231 -36.52351 -34.40463 -32.24043 -30.96618 -30.71711 -27.00842 -25.30624 -24.43754 -23.06771 -21.71765 -20.30392 -18.50742 -18.02059 -17.13502 -16.49980 -15.66539 -15.27215 -14.89139 -14.69334 -14.60277 -14.06873 -13.79552 -13.41194 -13.16341 -12.92246 -12.82782 -12.56825 -12.44933 -12.27447 -11.88558 -11.79159 -11.61215 -11.16261 -10.85814 -10.75397 -10.37617 -9.71141 -8.08497 -6.17049 0.64354 1.46829 1.48713 1.51781 1.55206 1.58083 2.48219 3.23000 3.35083 3.68438 3.92872 3.96956 4.11491 4.25738 4.33909 4.40338 4.63915 4.72073 4.75575 4.81883 4.91223 4.97662 5.09237 5.16540 5.26086 5.33775 5.51129 5.69332 5.78793 5.95081 5.99835 6.36042 6.94245 7.50114 7.53270 9.00383 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039247 B = 0.008202 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.265182 B = 3413.044750 C = 3948.172861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.277 5.277 4 N -0.126 5.126 5 N -0.300 5.300 6 C -0.037 4.037 7 C -0.005 4.005 8 C -0.023 4.023 9 C 0.051 3.949 10 H 0.004 0.996 11 C -0.530 4.530 12 H 0.064 0.936 13 C 0.017 3.983 14 N -0.916 5.916 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.093 4.093 20 C -0.026 4.026 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.117 0.883 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -8.001 5.989 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.071 5.071 4 N -0.103 5.103 5 N -0.164 5.164 6 C -0.177 4.177 7 C -0.139 4.139 8 C -0.062 4.062 9 C 0.032 3.968 10 H 0.022 0.978 11 C -0.568 4.568 12 H 0.082 0.918 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.775 3.225 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.188 1.188 19 C -0.132 4.132 20 C -0.065 4.065 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.136 0.864 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.890 -7.910 7.534 12.915 hybrid contribution 0.119 0.246 -1.953 1.972 sum -6.771 -7.663 5.581 11.650 Atomic orbital electron populations 1.22127 0.91826 1.05457 1.02549 1.22570 0.97379 0.74828 1.07451 1.47394 1.41758 1.14254 1.03647 1.78294 1.20218 0.99202 1.12611 1.74650 1.17308 1.11522 1.12963 1.22004 1.06891 0.97996 0.90837 1.22379 1.05393 0.92773 0.93384 1.20286 1.01951 1.00643 0.83370 1.18648 0.94148 0.90801 0.93192 0.97816 1.21449 1.20517 1.23277 0.91520 0.91806 1.25684 0.94415 0.95527 1.02578 1.70100 1.18522 1.31397 1.35446 0.85686 0.77703 0.78709 0.80409 1.20433 1.21606 1.18802 1.21506 0.98509 1.00369 0.92817 1.19975 1.00344 0.93230 0.92962 0.92610 0.92488 0.86434 0.85967 0.85910 0.90045 0.89613 0.93036 0.93678 0.92379 0.91700 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.10 1.93 6.96 86.38 0.60 2.53 16 3 N -0.28 -8.96 3.33 -335.07 -1.12 -10.08 16 4 N -0.13 -4.78 13.19 37.02 0.49 -4.29 16 5 N -0.30 -12.69 12.40 -48.99 -0.61 -13.30 16 6 C -0.04 -1.55 7.11 41.75 0.30 -1.25 16 7 C 0.00 -0.18 6.76 41.50 0.28 0.10 16 8 C -0.02 -0.87 5.22 29.94 0.16 -0.71 16 9 C 0.05 2.40 1.94 -11.36 -0.02 2.38 16 10 H 0.00 0.19 8.06 -2.39 -0.02 0.18 16 11 C -0.53 -26.78 8.47 25.60 0.22 -26.57 16 12 H 0.06 3.07 7.77 -2.91 -0.02 3.05 16 13 C 0.02 0.91 5.10 84.65 0.43 1.34 16 14 N -0.92 -51.07 12.20 21.45 0.26 -50.80 16 15 Si 0.95 41.24 29.55 68.60 2.03 43.27 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 19 C -0.09 -4.20 5.12 30.79 0.16 -4.04 16 20 C -0.03 -1.07 6.30 29.98 0.19 -0.88 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.12 2.01 7.71 -2.39 -0.02 1.99 16 25 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.73 7.87 -2.39 -0.02 2.71 16 27 H 0.09 2.97 8.12 -2.39 -0.02 2.95 16 28 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.04 1.93 8.12 -2.39 -0.02 1.91 16 30 H 0.06 2.91 6.73 -2.39 -0.02 2.90 16 31 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 32 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 Total: -1.00 -63.19 266.73 5.20 -57.99 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.10 Total: 6.25 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.05 Total: -29.03 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -0.97 Total: -78.47 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -63.19 5.20 -57.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261178749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.708 kcal (2) G-P(sol) polarization free energy of solvation -63.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds