Wall clock time and date at job start Mon Mar 30 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46848 * 2 1 4 4 N 1.29109 * 126.00656 * 270.02380 * 3 2 1 5 5 N 1.29022 * 110.25867 * 180.02562 * 4 3 2 6 6 C 1.32841 * 108.66322 * 0.03285 * 5 4 3 7 7 C 1.34396 * 126.00660 * 90.00349 * 3 2 1 8 8 C 1.50528 * 129.25718 * 359.85461 * 7 3 2 9 9 C 1.53439 * 108.32962 * 196.49631 * 8 7 3 10 10 C 1.53113 * 109.55125 * 310.27489 * 9 8 7 11 11 H 1.09003 * 109.45248 * 310.01879 * 10 9 8 12 12 C 1.50697 * 109.44972 * 190.08302 * 10 9 8 13 13 H 1.07998 * 120.00192 * 359.89024 * 12 10 9 14 14 C 1.37878 * 119.99713 * 179.88447 * 12 10 9 15 15 N 1.31516 * 120.00077 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99986 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47344 * 89.99771 * 16 14 12 18 18 H 1.48503 * 109.46797 * 209.99664 * 16 14 12 19 19 H 1.48499 * 109.47224 * 329.99741 * 16 14 12 20 20 C 1.50592 * 129.22886 * 179.89985 * 6 5 4 21 21 H 1.09009 * 109.47320 * 299.99933 * 1 2 3 22 22 H 1.09006 * 109.47532 * 59.99679 * 1 2 3 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47017 * 240.00384 * 2 1 3 25 25 H 1.09000 * 109.47220 * 119.99989 * 2 1 3 26 26 H 1.09007 * 109.69646 * 76.78872 * 8 7 3 27 27 H 1.09004 * 109.72742 * 316.22342 * 8 7 3 28 28 H 1.08996 * 109.45862 * 190.24992 * 9 8 7 29 29 H 1.09002 * 109.45882 * 70.29602 * 9 8 7 30 30 H 0.97001 * 120.00245 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.69193 * 76.79921 * 20 6 5 32 32 H 1.09006 * 109.68979 * 316.25976 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2708 2.0970 -1.0444 5 7 2.6853 3.2675 -0.6943 6 6 2.7094 3.3307 0.6324 7 6 2.2816 2.1261 1.0872 8 6 2.1513 1.7661 2.5430 9 6 2.1722 3.0620 3.3643 10 6 3.3641 3.9217 2.9347 11 1 4.2688 3.3138 2.9344 12 6 3.5300 5.0674 3.8996 13 1 2.8526 5.1730 4.7340 14 6 4.5467 5.9806 3.7170 15 7 4.6919 6.9802 4.5593 16 14 5.7180 5.7981 2.2733 17 1 5.1799 6.5368 1.1029 18 1 7.0461 6.3520 2.6404 19 1 5.8592 4.3605 1.9290 20 6 3.1170 4.4736 1.5242 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.9849 1.1295 2.8400 27 1 1.2107 1.2409 2.7093 28 1 2.2623 2.8194 4.4231 29 1 1.2472 3.6135 3.1959 30 1 5.4070 7.6229 4.4307 31 1 2.3214 5.2181 1.5540 32 1 4.0315 4.9285 1.1434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261199322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:46 Heat of formation + Delta-G solvation = 84.678433 kcal Electronic energy + Delta-G solvation = -15281.197225 eV Core-core repulsion = 12857.527138 eV Total energy + Delta-G solvation = -2423.670088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.97850 -36.79149 -35.43343 -32.59594 -31.09647 -29.87675 -29.34152 -25.15605 -24.45709 -23.17726 -21.21363 -20.61649 -18.73475 -17.00651 -16.75434 -15.99341 -14.81226 -14.49813 -14.28298 -13.61813 -13.28002 -13.14915 -12.77078 -12.57635 -12.50487 -12.06607 -11.73195 -11.43105 -11.07247 -10.97303 -10.64613 -10.33615 -10.02639 -9.86777 -9.56340 -9.27212 -9.07207 -8.54902 -8.29678 -6.08818 -4.09253 1.92350 2.57175 3.03775 3.33687 3.43307 3.45529 4.37608 4.42147 4.63892 4.67395 4.90156 5.14556 5.23211 5.28570 5.35221 5.41435 5.50802 5.74261 5.82511 5.93309 6.16085 6.25242 6.32849 6.47285 6.64045 6.80226 6.91197 6.94342 7.15407 7.45975 7.72792 8.49208 8.92723 8.95567 9.53712 11.03990 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045963 B = 0.008890 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.041193 B = 3148.756651 C = 3557.327461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.290 5.290 4 N -0.114 5.114 5 N -0.272 5.272 6 C -0.003 4.003 7 C -0.020 4.020 8 C -0.045 4.045 9 C -0.095 4.095 10 C 0.017 3.983 11 H 0.031 0.969 12 C -0.515 4.515 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.295 1.295 19 H -0.265 1.265 20 C -0.041 4.041 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.265 0.735 31 H 0.083 0.917 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -14.657 -5.534 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.084 5.084 4 N -0.091 5.091 5 N -0.137 5.137 6 C -0.143 4.143 7 C -0.153 4.153 8 C -0.084 4.084 9 C -0.133 4.133 10 C -0.003 4.003 11 H 0.049 0.951 12 C -0.552 4.552 13 H 0.096 0.904 14 C -0.128 4.128 15 N -0.536 5.536 16 Si 0.707 3.293 17 H -0.200 1.200 18 H -0.223 1.223 19 H -0.190 1.190 20 C -0.080 4.080 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.677 -14.487 -7.084 17.454 hybrid contribution 0.648 -0.162 0.163 0.687 sum -6.030 -14.649 -6.921 17.287 Atomic orbital electron populations 1.22150 0.93334 1.03469 1.03755 1.21956 0.96111 0.77479 1.05293 1.46970 1.43554 1.12903 1.04950 1.78444 1.19593 0.99350 1.11702 1.74747 1.15872 1.10116 1.12927 1.22283 1.04031 0.97228 0.90745 1.22007 1.07697 0.93283 0.92286 1.20318 1.01462 1.00496 0.86117 1.21530 1.00316 0.92962 0.98505 1.19261 0.94163 0.95851 0.90997 0.95063 1.20974 1.14852 1.08342 1.11060 0.90444 1.24995 0.97063 0.94874 0.95898 1.69886 1.32586 1.14330 1.36778 0.86998 0.80249 0.79076 0.82971 1.20039 1.22261 1.19036 1.20743 1.00801 0.92701 0.93793 0.91481 0.91386 0.89992 0.87962 0.88125 0.90375 0.91291 0.90926 0.92141 0.92556 0.89878 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.11 1.10 6.96 -4.04 -0.03 1.07 16 3 N -0.29 -4.59 3.33 -57.24 -0.19 -4.78 16 4 N -0.11 -2.18 13.19 60.35 0.80 -1.38 16 5 N -0.27 -5.96 12.39 33.17 0.41 -5.55 16 6 C 0.00 -0.07 7.11 -83.13 -0.59 -0.66 16 7 C -0.02 -0.35 6.77 -82.47 -0.56 -0.91 16 8 C -0.04 -0.66 5.94 -27.74 -0.16 -0.82 16 9 C -0.10 -1.72 5.15 -26.45 -0.14 -1.86 16 10 C 0.02 0.38 1.66 -91.48 -0.15 0.23 16 11 H 0.03 0.73 7.17 -51.93 -0.37 0.36 16 12 C -0.51 -13.89 9.10 -34.44 -0.31 -14.21 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 15 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 16 Si 0.88 22.14 24.28 -169.99 -4.13 18.01 16 17 H -0.27 -6.87 6.96 56.52 0.39 -6.48 16 18 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.27 -6.54 6.51 56.52 0.37 -6.17 16 20 C -0.04 -0.94 4.88 -27.70 -0.14 -1.08 16 21 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 0.76 7.96 -51.93 -0.41 0.34 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.26 8.11 -51.93 -0.42 0.83 16 29 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.08 1.89 8.12 -51.93 -0.42 1.47 16 32 H 0.06 1.54 3.67 -51.93 -0.19 1.35 16 LS Contribution 259.28 15.07 3.91 3.91 Total: -1.00 -32.50 259.28 -4.60 -37.10 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.37 Total: -3.81 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.80 Total: -17.23 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.79 Total: -37.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.13 Total: 18.01 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.50 -4.60 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.781 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds