Wall clock time and date at job start Mon Mar 30 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46848 * 2 1 4 4 N 1.29109 * 126.00656 * 270.02380 * 3 2 1 5 5 N 1.29022 * 110.25867 * 180.02562 * 4 3 2 6 6 C 1.32841 * 108.66322 * 0.03285 * 5 4 3 7 7 C 1.34396 * 126.00660 * 90.00349 * 3 2 1 8 8 C 1.50528 * 129.25718 * 359.85461 * 7 3 2 9 9 C 1.53439 * 108.32962 * 196.49631 * 8 7 3 10 10 C 1.53113 * 109.55125 * 310.27489 * 9 8 7 11 11 H 1.09003 * 109.45248 * 310.01879 * 10 9 8 12 12 C 1.50697 * 109.44972 * 190.08302 * 10 9 8 13 13 H 1.07998 * 120.00192 * 359.89024 * 12 10 9 14 14 C 1.37878 * 119.99713 * 179.88447 * 12 10 9 15 15 N 1.31516 * 120.00077 * 180.02562 * 14 12 10 16 16 Si 1.86801 * 119.99986 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.47344 * 89.99771 * 16 14 12 18 18 H 1.48503 * 109.46797 * 209.99664 * 16 14 12 19 19 H 1.48499 * 109.47224 * 329.99741 * 16 14 12 20 20 C 1.50592 * 129.22886 * 179.89985 * 6 5 4 21 21 H 1.09009 * 109.47320 * 299.99933 * 1 2 3 22 22 H 1.09006 * 109.47532 * 59.99679 * 1 2 3 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47017 * 240.00384 * 2 1 3 25 25 H 1.09000 * 109.47220 * 119.99989 * 2 1 3 26 26 H 1.09007 * 109.69646 * 76.78872 * 8 7 3 27 27 H 1.09004 * 109.72742 * 316.22342 * 8 7 3 28 28 H 1.08996 * 109.45862 * 190.24992 * 9 8 7 29 29 H 1.09002 * 109.45882 * 70.29602 * 9 8 7 30 30 H 0.97001 * 120.00245 * 180.02562 * 15 14 12 31 31 H 1.09002 * 109.69193 * 76.79921 * 20 6 5 32 32 H 1.09006 * 109.68979 * 316.25976 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2708 2.0970 -1.0444 5 7 2.6853 3.2675 -0.6943 6 6 2.7094 3.3307 0.6324 7 6 2.2816 2.1261 1.0872 8 6 2.1513 1.7661 2.5430 9 6 2.1722 3.0620 3.3643 10 6 3.3641 3.9217 2.9347 11 1 4.2688 3.3138 2.9344 12 6 3.5300 5.0674 3.8996 13 1 2.8526 5.1730 4.7340 14 6 4.5467 5.9806 3.7170 15 7 4.6919 6.9802 4.5593 16 14 5.7180 5.7981 2.2733 17 1 5.1799 6.5368 1.1029 18 1 7.0461 6.3520 2.6404 19 1 5.8592 4.3605 1.9290 20 6 3.1170 4.4736 1.5242 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.9849 1.1295 2.8400 27 1 1.2107 1.2409 2.7093 28 1 2.2623 2.8194 4.4231 29 1 1.2472 3.6135 3.1959 30 1 5.4070 7.6229 4.4307 31 1 2.3214 5.2181 1.5540 32 1 4.0315 4.9285 1.1434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261199322.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:45 Heat of formation + Delta-G solvation = 61.926043 kcal Electronic energy + Delta-G solvation = -15282.183843 eV Core-core repulsion = 12857.527138 eV Total energy + Delta-G solvation = -2424.656705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.36863 -38.40099 -36.53883 -34.60255 -32.30843 -31.49019 -30.71031 -27.06440 -25.41963 -24.65513 -22.85603 -21.83887 -20.31188 -18.85171 -18.18840 -17.35687 -16.47559 -15.90823 -15.39311 -15.14782 -14.88725 -14.57266 -14.24467 -13.98253 -13.81809 -13.17057 -12.97277 -12.78323 -12.67735 -12.43960 -12.20063 -11.98094 -11.81877 -11.51720 -11.15877 -11.07306 -10.82972 -10.68618 -9.76692 -8.30052 -6.31873 0.59765 1.30338 1.35020 1.40851 1.48871 1.51249 2.30521 3.03116 3.29820 3.64805 3.84670 3.96622 3.97511 4.16056 4.28672 4.31126 4.58388 4.62862 4.66464 4.75798 4.79167 4.83914 4.98171 5.10660 5.18210 5.22866 5.27764 5.52380 5.68310 5.69312 5.78654 6.33314 6.76707 7.34149 7.49762 8.86384 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045963 B = 0.008890 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.041193 B = 3148.756651 C = 3557.327461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.273 5.273 4 N -0.125 5.125 5 N -0.312 5.312 6 C -0.041 4.041 7 C -0.004 4.004 8 C -0.035 4.035 9 C -0.092 4.092 10 C 0.017 3.983 11 H 0.029 0.971 12 C -0.509 4.509 13 H 0.051 0.949 14 C 0.024 3.976 15 N -0.943 5.943 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.294 1.294 19 H -0.255 1.255 20 C -0.035 4.035 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.265 0.735 31 H 0.068 0.932 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 -18.106 -5.880 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.067 5.067 4 N -0.103 5.103 5 N -0.176 5.176 6 C -0.181 4.181 7 C -0.139 4.139 8 C -0.074 4.074 9 C -0.130 4.130 10 C -0.003 4.003 11 H 0.047 0.953 12 C -0.547 4.547 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.584 5.584 16 Si 0.759 3.241 17 H -0.205 1.205 18 H -0.221 1.221 19 H -0.180 1.180 20 C -0.075 4.075 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.153 0.847 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.534 -17.980 -7.452 20.870 hybrid contribution 0.801 0.825 0.294 1.187 sum -6.733 -17.154 -7.158 19.770 Atomic orbital electron populations 1.22156 0.91897 1.05484 1.02641 1.22647 0.97263 0.74391 1.07909 1.47460 1.41412 1.14321 1.03495 1.78329 1.20077 0.99001 1.12858 1.74670 1.17507 1.11807 1.13573 1.22087 1.06889 0.98336 0.90825 1.22293 1.05578 0.92119 0.93877 1.20400 1.04945 0.98956 0.83076 1.21440 0.97754 0.94062 0.99791 1.19219 0.96300 0.94872 0.89898 0.95314 1.21336 1.13325 1.09238 1.10802 0.93101 1.25666 0.98881 0.94893 0.97973 1.70002 1.33839 1.15677 1.38842 0.86127 0.78405 0.79424 0.80135 1.20461 1.22109 1.17987 1.20442 0.99382 0.93344 0.94300 0.91820 0.93278 0.86382 0.86352 0.84679 0.87938 0.86654 0.89859 0.92551 0.92537 0.91331 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.24 71.98 0.74 -1.19 16 2 C 0.10 1.40 6.96 86.38 0.60 2.01 16 3 N -0.27 -7.71 3.33 -335.01 -1.11 -8.83 16 4 N -0.13 -4.60 13.19 37.02 0.49 -4.11 16 5 N -0.31 -13.52 12.39 -48.98 -0.61 -14.13 16 6 C -0.04 -1.70 7.11 41.78 0.30 -1.40 16 7 C 0.00 -0.12 6.77 41.52 0.28 0.16 16 8 C -0.03 -0.86 5.94 29.94 0.18 -0.68 16 9 C -0.09 -3.12 5.15 30.78 0.16 -2.96 16 10 C 0.02 0.74 1.66 -11.35 -0.02 0.72 16 11 H 0.03 1.31 7.17 -2.39 -0.02 1.29 16 12 C -0.51 -27.90 9.10 25.60 0.23 -27.66 16 13 H 0.05 3.00 7.99 -2.91 -0.02 2.97 16 14 C 0.02 1.38 5.45 84.65 0.46 1.84 16 15 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 16 Si 0.93 46.69 24.28 68.60 1.67 48.36 16 17 H -0.28 -13.97 6.96 99.48 0.69 -13.28 16 18 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 19 H -0.26 -12.25 6.51 99.48 0.65 -11.61 16 20 C -0.04 -1.62 4.88 29.97 0.15 -1.48 16 21 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 22 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.14 1.13 7.96 -2.39 -0.02 1.11 16 26 H 0.10 2.16 8.14 -2.38 -0.02 2.15 16 27 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 29 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.07 3.23 8.12 -2.39 -0.02 3.21 16 32 H 0.04 2.06 3.67 -2.38 -0.01 2.05 16 Total: -1.00 -73.48 259.28 4.84 -68.64 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: 1.03 Total: -1.18 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.07 Total: -30.66 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -0.93 Total: -85.15 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.36 kcal Total: -73.48 4.84 -68.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199322.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.567 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds