Wall clock time and date at job start Mon Mar 30 2020 03:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46641 * 2 1 4 4 N 1.29100 * 126.00477 * 269.95311 * 3 2 1 5 5 N 1.29018 * 110.25631 * 179.97438 * 4 3 2 6 6 C 1.32904 * 108.63816 * 359.97438 * 5 4 3 7 7 C 1.34395 * 126.00408 * 90.00147 * 3 2 1 8 8 C 1.50533 * 129.25921 * 0.07872 * 7 3 2 9 9 C 1.53432 * 108.32664 * 163.59692 * 8 7 3 10 10 C 1.53111 * 109.55181 * 49.71540 * 9 8 7 11 11 H 1.08992 * 109.45633 * 49.94647 * 10 9 8 12 12 C 1.50704 * 109.45019 * 169.90297 * 10 9 8 13 13 H 1.07996 * 119.99853 * 5.71840 * 12 10 9 14 14 C 1.37869 * 119.99768 * 185.71705 * 12 10 9 15 15 N 1.31519 * 120.00308 * 198.78656 * 14 12 10 16 16 Si 1.86805 * 120.00135 * 18.79001 * 14 12 10 17 17 H 1.48506 * 109.46991 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47160 * 299.99616 * 16 14 12 19 19 H 1.48495 * 109.46966 * 60.00037 * 16 14 12 20 20 C 1.50585 * 129.17507 * 180.21278 * 6 5 4 21 21 H 1.08995 * 109.47235 * 299.99897 * 1 2 3 22 22 H 1.09001 * 109.47197 * 60.00407 * 1 2 3 23 23 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47235 * 240.00103 * 2 1 3 25 25 H 1.08998 * 109.47010 * 120.00085 * 2 1 3 26 26 H 1.09007 * 109.69015 * 43.88734 * 8 7 3 27 27 H 1.09004 * 109.68956 * 283.30806 * 8 7 3 28 28 H 1.08998 * 109.45491 * 289.68978 * 9 8 7 29 29 H 1.09002 * 109.45611 * 169.73604 * 9 8 7 30 30 H 0.96999 * 119.99360 * 354.65960 * 15 14 12 31 31 H 1.09009 * 109.67077 * 43.63825 * 20 6 5 32 32 H 1.08998 * 109.70954 * 283.06850 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2720 2.0966 -1.0444 5 7 2.6850 3.2676 -0.6942 6 6 2.7055 3.3315 0.6331 7 6 2.2816 2.1262 1.0872 8 6 2.1555 1.7646 2.5430 9 6 2.9522 2.7865 3.3647 10 6 2.5651 4.2039 2.9341 11 1 1.4793 4.2988 2.9320 12 6 3.1542 5.2001 3.8993 13 1 3.8202 4.8658 4.6809 14 6 2.8428 6.5382 3.7845 15 7 3.6081 7.4429 4.3551 16 14 1.3337 7.0665 2.8184 17 1 1.2214 8.5471 2.8463 18 1 1.4597 6.6057 1.4124 19 1 0.1202 6.4670 3.4291 20 6 3.1043 4.4779 1.5243 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5581 0.7653 2.7095 27 1 1.1068 1.7927 2.8389 28 1 4.0186 2.6347 3.1975 29 1 2.7285 2.6548 4.4233 30 1 4.3463 7.1667 4.9205 31 1 2.6783 5.4055 1.1417 32 1 4.1909 4.5579 1.5562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261199323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:49 Heat of formation + Delta-G solvation = 77.644990 kcal Electronic energy + Delta-G solvation = -15261.502830 eV Core-core repulsion = 12837.527750 eV Total energy + Delta-G solvation = -2423.975081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.94244 -36.71694 -35.40206 -32.67292 -31.04911 -29.73865 -29.25125 -24.85883 -24.44614 -23.01196 -21.01867 -20.53585 -18.63703 -17.52943 -16.86717 -16.04651 -14.75720 -14.24384 -13.93200 -13.66991 -13.41620 -13.00206 -12.86132 -12.68714 -12.25769 -11.94589 -11.64670 -11.42553 -11.01070 -10.66217 -10.57611 -10.32201 -10.09832 -9.86883 -9.56098 -9.40482 -8.85348 -8.26677 -8.15402 -6.44767 -4.06803 1.95453 2.59757 3.08726 3.44391 3.47382 3.64732 4.39198 4.51310 4.65811 4.69737 4.90651 5.16494 5.28510 5.29432 5.35518 5.46216 5.54809 5.75960 5.86048 5.95570 6.21332 6.29932 6.37706 6.53935 6.70881 6.86896 6.97237 7.01282 7.26688 7.47295 8.12490 8.38303 8.91103 8.97412 9.61934 10.94817 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.008709 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.365353 B = 3214.152705 C = 3387.003724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.291 5.291 4 N -0.115 5.115 5 N -0.272 5.272 6 C -0.001 4.001 7 C -0.024 4.024 8 C -0.043 4.043 9 C -0.096 4.096 10 C 0.025 3.975 11 H 0.024 0.976 12 C -0.601 4.601 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.904 5.904 16 Si 1.040 2.960 17 H -0.285 1.285 18 H -0.270 1.270 19 H -0.284 1.284 20 C -0.044 4.044 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -15.352 -4.954 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.084 5.084 4 N -0.092 5.092 5 N -0.136 5.136 6 C -0.141 4.141 7 C -0.157 4.157 8 C -0.083 4.083 9 C -0.134 4.134 10 C 0.005 3.995 11 H 0.042 0.958 12 C -0.638 4.638 13 H 0.076 0.924 14 C -0.172 4.172 15 N -0.537 5.537 16 Si 0.869 3.131 17 H -0.211 1.211 18 H -0.197 1.197 19 H -0.210 1.210 20 C -0.083 4.083 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.529 -14.001 -7.084 16.995 hybrid contribution 0.790 -1.629 1.572 2.398 sum -5.739 -15.631 -5.511 17.539 Atomic orbital electron populations 1.22147 0.93355 1.03439 1.03790 1.21940 0.96115 0.77566 1.05180 1.46962 1.43612 1.12901 1.04969 1.78435 1.19569 0.99458 1.11710 1.74778 1.15943 1.09957 1.12961 1.22427 1.03799 0.97125 0.90743 1.21972 1.08092 0.93418 0.92199 1.20300 1.01791 0.99877 0.86300 1.21552 0.98674 0.94929 0.98245 1.19046 0.96001 0.92750 0.91669 0.95838 1.21903 1.32225 0.93287 1.16400 0.92405 1.25744 1.00411 0.92881 0.98164 1.70868 1.16705 1.36067 1.30077 0.84098 0.75960 0.76189 0.76896 1.21135 1.19679 1.21022 1.20844 1.01475 0.92558 0.93453 0.91483 0.91372 0.90018 0.88005 0.88233 0.91533 0.90467 0.92489 0.91357 0.92206 0.90311 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.11 1.13 6.96 -4.04 -0.03 1.10 16 3 N -0.29 -4.64 3.33 -57.26 -0.19 -4.83 16 4 N -0.11 -2.20 13.19 60.35 0.80 -1.41 16 5 N -0.27 -5.95 12.40 33.16 0.41 -5.54 16 6 C 0.00 -0.03 7.11 -83.13 -0.59 -0.62 16 7 C -0.02 -0.43 6.76 -82.50 -0.56 -0.99 16 8 C -0.04 -0.66 5.97 -27.74 -0.17 -0.82 16 9 C -0.10 -1.80 5.15 -26.45 -0.14 -1.93 16 10 C 0.03 0.57 1.66 -91.50 -0.15 0.42 16 11 H 0.02 0.55 6.74 -51.93 -0.35 0.20 16 12 C -0.60 -16.26 8.77 -34.44 -0.30 -16.56 16 13 H 0.06 1.66 7.99 -52.49 -0.42 1.24 16 14 C 0.03 0.95 5.33 -17.82 -0.10 0.86 16 15 N -0.90 -27.36 13.70 55.43 0.76 -26.60 16 16 Si 1.04 25.26 26.54 -169.99 -4.51 20.75 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.28 5.45 56.52 0.31 -5.97 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.04 -1.01 5.23 -27.73 -0.15 -1.15 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.10 0.76 7.71 -51.93 -0.40 0.36 16 26 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 29 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 30 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 31 H 0.08 1.90 4.97 -51.92 -0.26 1.65 16 32 H 0.08 1.79 8.12 -51.93 -0.42 1.37 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -32.18 261.08 -5.05 -37.23 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.46 Total: -2.77 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.79 Total: -20.76 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 1.78 Total: -38.38 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.51 Total: 20.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.18 -5.05 -37.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.878 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds