Wall clock time and date at job start Mon Mar 30 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46641 * 2 1 4 4 N 1.29100 * 126.00477 * 269.95311 * 3 2 1 5 5 N 1.29018 * 110.25631 * 179.97438 * 4 3 2 6 6 C 1.32904 * 108.63816 * 359.97438 * 5 4 3 7 7 C 1.34395 * 126.00408 * 90.00147 * 3 2 1 8 8 C 1.50533 * 129.25921 * 0.07872 * 7 3 2 9 9 C 1.53432 * 108.32664 * 163.59692 * 8 7 3 10 10 C 1.53111 * 109.55181 * 49.71540 * 9 8 7 11 11 H 1.08992 * 109.45633 * 49.94647 * 10 9 8 12 12 C 1.50704 * 109.45019 * 169.90297 * 10 9 8 13 13 H 1.07996 * 119.99853 * 5.71840 * 12 10 9 14 14 C 1.37869 * 119.99768 * 185.71705 * 12 10 9 15 15 N 1.31519 * 120.00308 * 198.78656 * 14 12 10 16 16 Si 1.86805 * 120.00135 * 18.79001 * 14 12 10 17 17 H 1.48506 * 109.46991 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47160 * 299.99616 * 16 14 12 19 19 H 1.48495 * 109.46966 * 60.00037 * 16 14 12 20 20 C 1.50585 * 129.17507 * 180.21278 * 6 5 4 21 21 H 1.08995 * 109.47235 * 299.99897 * 1 2 3 22 22 H 1.09001 * 109.47197 * 60.00407 * 1 2 3 23 23 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47235 * 240.00103 * 2 1 3 25 25 H 1.08998 * 109.47010 * 120.00085 * 2 1 3 26 26 H 1.09007 * 109.69015 * 43.88734 * 8 7 3 27 27 H 1.09004 * 109.68956 * 283.30806 * 8 7 3 28 28 H 1.08998 * 109.45491 * 289.68978 * 9 8 7 29 29 H 1.09002 * 109.45611 * 169.73604 * 9 8 7 30 30 H 0.96999 * 119.99360 * 354.65960 * 15 14 12 31 31 H 1.09009 * 109.67077 * 43.63825 * 20 6 5 32 32 H 1.08998 * 109.70954 * 283.06850 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2720 2.0966 -1.0444 5 7 2.6850 3.2676 -0.6942 6 6 2.7055 3.3315 0.6331 7 6 2.2816 2.1262 1.0872 8 6 2.1555 1.7646 2.5430 9 6 2.9522 2.7865 3.3647 10 6 2.5651 4.2039 2.9341 11 1 1.4793 4.2988 2.9320 12 6 3.1542 5.2001 3.8993 13 1 3.8202 4.8658 4.6809 14 6 2.8428 6.5382 3.7845 15 7 3.6081 7.4429 4.3551 16 14 1.3337 7.0665 2.8184 17 1 1.2214 8.5471 2.8463 18 1 1.4597 6.6057 1.4124 19 1 0.1202 6.4670 3.4291 20 6 3.1043 4.4779 1.5243 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.5581 0.7653 2.7095 27 1 1.1068 1.7927 2.8389 28 1 4.0186 2.6347 3.1975 29 1 2.7285 2.6548 4.4233 30 1 4.3463 7.1667 4.9205 31 1 2.6783 5.4055 1.1417 32 1 4.1909 4.5579 1.5562 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261199323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:48 Heat of formation + Delta-G solvation = 55.571203 kcal Electronic energy + Delta-G solvation = -15262.460022 eV Core-core repulsion = 12837.527750 eV Total energy + Delta-G solvation = -2424.932272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.34903 -38.35073 -36.52313 -34.69946 -32.24505 -31.38060 -30.65276 -26.76221 -25.42291 -24.52302 -22.69124 -21.76569 -20.27944 -19.62662 -18.07976 -17.38554 -16.01107 -15.79222 -15.39443 -15.14405 -14.93207 -14.42485 -14.22842 -14.08075 -13.70810 -13.09711 -12.99745 -12.63488 -12.40606 -12.39404 -12.13817 -11.98588 -11.84552 -11.51685 -11.29606 -10.95545 -10.77275 -10.33435 -9.74545 -8.69626 -6.31953 0.61119 1.46457 1.49531 1.51097 1.55064 1.71277 2.49465 3.05160 3.32682 3.65233 3.87584 3.96243 3.98615 4.16075 4.28650 4.34977 4.58204 4.65060 4.69776 4.76986 4.79819 4.89025 4.99770 5.09569 5.17870 5.26712 5.31357 5.52805 5.67020 5.78122 6.08809 6.12753 6.65612 7.44336 7.51988 8.68938 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.008709 C = 0.008265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.365353 B = 3214.152705 C = 3387.003724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.273 5.273 4 N -0.125 5.125 5 N -0.310 5.310 6 C -0.038 4.038 7 C -0.008 4.008 8 C -0.033 4.033 9 C -0.094 4.094 10 C 0.023 3.977 11 H 0.029 0.971 12 C -0.596 4.596 13 H 0.029 0.971 14 C -0.015 4.015 15 N -0.940 5.940 16 Si 1.075 2.925 17 H -0.291 1.291 18 H -0.259 1.259 19 H -0.257 1.257 20 C -0.035 4.035 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 -18.694 -5.278 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.067 5.067 4 N -0.103 5.103 5 N -0.174 5.174 6 C -0.178 4.178 7 C -0.143 4.143 8 C -0.072 4.072 9 C -0.132 4.132 10 C 0.004 3.996 11 H 0.047 0.953 12 C -0.634 4.634 13 H 0.047 0.953 14 C -0.214 4.214 15 N -0.576 5.576 16 Si 0.898 3.102 17 H -0.217 1.217 18 H -0.184 1.184 19 H -0.182 1.182 20 C -0.075 4.075 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.136 0.864 24 H 0.137 0.863 25 H 0.153 0.847 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.451 -17.397 -7.420 20.716 hybrid contribution 1.429 -0.719 1.688 2.326 sum -7.022 -18.117 -5.732 20.258 Atomic orbital electron populations 1.22155 0.92042 1.05466 1.02581 1.22631 0.97170 0.74473 1.07879 1.47446 1.41472 1.14316 1.03493 1.78324 1.20000 0.99112 1.12830 1.74703 1.17519 1.11644 1.13552 1.22187 1.06670 0.98145 0.90830 1.22226 1.06065 0.92265 0.93748 1.20362 1.02837 1.00687 0.83320 1.21447 0.98929 0.93337 0.99486 1.19013 0.95771 0.94430 0.90425 0.95335 1.22178 1.30843 0.94317 1.16052 0.95265 1.26965 1.02131 0.93607 0.98724 1.70983 1.17663 1.36848 1.32082 0.83661 0.74072 0.75771 0.76727 1.21719 1.18430 1.18204 1.20484 1.00005 0.92926 0.94058 0.92008 0.93251 0.86361 0.86269 0.84737 0.86861 0.87992 0.93337 0.90463 0.93635 0.92381 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.24 71.98 0.74 -1.31 16 2 C 0.10 1.44 6.96 86.38 0.60 2.04 16 3 N -0.27 -7.78 3.33 -335.06 -1.12 -8.90 16 4 N -0.13 -4.61 13.19 37.02 0.49 -4.12 16 5 N -0.31 -13.47 12.40 -49.00 -0.61 -14.07 16 6 C -0.04 -1.59 7.11 41.75 0.30 -1.29 16 7 C -0.01 -0.27 6.76 41.50 0.28 0.01 16 8 C -0.03 -0.85 5.97 29.94 0.18 -0.67 16 9 C -0.09 -3.29 5.15 30.78 0.16 -3.13 16 10 C 0.02 1.05 1.66 -11.37 -0.02 1.03 16 11 H 0.03 1.27 6.74 -2.39 -0.02 1.25 16 12 C -0.60 -32.87 8.77 25.60 0.22 -32.64 16 13 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 14 C -0.02 -0.89 5.33 84.65 0.45 -0.44 16 15 N -0.94 -58.89 13.70 21.45 0.29 -58.60 16 16 Si 1.07 51.23 26.54 68.60 1.82 53.05 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 18 H -0.26 -11.81 5.45 99.48 0.54 -11.26 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 C -0.04 -1.63 5.23 29.95 0.16 -1.47 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.13 1.14 7.71 -2.39 -0.02 1.12 16 26 H 0.11 1.95 7.87 -2.38 -0.02 1.93 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.76 8.12 -2.39 -0.02 1.75 16 29 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 30 H 0.25 16.03 8.73 -92.71 -0.81 15.23 16 31 H 0.06 2.86 4.97 -2.38 -0.01 2.85 16 32 H 0.05 2.69 8.12 -2.39 -0.02 2.67 16 Total: -1.00 -73.43 261.08 4.85 -68.58 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 0.90 Total: 1.94 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.07 Total: -37.88 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -0.94 Total: -85.69 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 1.82 Total: 53.05 kcal Total: -73.43 4.85 -68.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261199323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.149 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds