Wall clock time and date at job start Mon Mar 30 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 N 1.46494 * 109.46686 * 120.00143 * 2 1 3 5 5 N 1.28741 * 125.90453 * 299.96989 * 4 2 1 6 6 N 1.28651 * 110.16482 * 180.02562 * 5 4 2 7 7 C 1.33846 * 108.83322 * 0.02562 * 6 5 4 8 8 C 1.35207 * 106.49837 * 0.08494 * 7 6 5 9 9 C 1.51068 * 110.27620 * 180.08899 * 8 7 6 10 10 H 1.09004 * 110.33667 * 257.73388 * 9 8 7 11 11 C 1.50706 * 110.33261 * 135.60043 * 9 8 7 12 12 H 1.07995 * 120.00167 * 1.17956 * 11 9 8 13 13 C 1.37879 * 119.99394 * 181.45654 * 11 9 8 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 C 1.54499 * 105.08979 * 16.66909 * 9 8 7 20 20 C 1.51120 * 143.16061 * 180.02562 * 7 6 5 21 21 H 1.08998 * 109.46583 * 300.00427 * 1 2 3 22 22 H 1.08994 * 109.46732 * 59.99842 * 1 2 3 23 23 H 1.08994 * 109.47228 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46583 * 239.99573 * 2 1 3 25 25 H 1.08997 * 109.46630 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47020 * 299.99755 * 3 2 1 27 27 H 1.08995 * 109.47044 * 59.99947 * 3 2 1 28 28 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 29 29 H 1.09002 * 110.93342 * 92.71814 * 19 9 8 30 30 H 1.08992 * 110.93258 * 216.38800 * 19 9 8 31 31 H 1.08993 * 110.33531 * 44.30399 * 20 7 6 32 32 H 1.09004 * 110.32837 * 282.07296 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7788 -0.3510 2.4146 6 7 2.3562 -1.1673 3.2242 7 6 3.0106 -2.0922 2.5116 8 6 2.8012 -1.7929 1.2098 9 6 3.5058 -2.7925 0.3229 10 1 4.4259 -2.3639 -0.0745 11 6 2.6009 -3.2232 -0.8027 12 1 1.6102 -2.8023 -0.8903 13 6 3.0359 -4.1588 -1.7173 14 7 2.2460 -4.5350 -2.6992 15 14 4.7463 -4.8931 -1.5609 16 1 4.6862 -6.1123 -0.7153 17 1 5.2568 -5.2502 -2.9088 18 1 5.6557 -3.9003 -0.9342 19 6 3.8257 -3.9915 1.2433 20 6 3.8801 -3.3220 2.6346 21 1 -0.3632 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 2.5519 -5.1935 -3.3425 29 1 3.0320 -4.7374 1.2013 30 1 4.7880 -4.4340 0.9861 31 1 3.4806 -3.9939 3.3941 32 1 4.9040 -3.0389 2.8788 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261204970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:21 Heat of formation + Delta-G solvation = 77.901909 kcal Electronic energy + Delta-G solvation = -15474.249273 eV Core-core repulsion = 13050.285333 eV Total energy + Delta-G solvation = -2423.963940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.29447 -38.33040 -37.16091 -34.47687 -32.51900 -30.31609 -29.72581 -28.33033 -25.54487 -24.67750 -22.84556 -21.88702 -20.31875 -18.95080 -17.94798 -17.18314 -16.31260 -15.65390 -15.60644 -15.18655 -14.43274 -14.30091 -14.14490 -13.89335 -13.59248 -13.21947 -13.01169 -12.82910 -12.56961 -12.44842 -12.40450 -12.02690 -11.98239 -11.59861 -11.39331 -11.29041 -10.84227 -10.72172 -9.60100 -8.28897 -6.36462 0.74135 1.40894 1.42496 1.46460 1.53971 1.60570 2.37226 2.96204 3.10316 3.52878 3.67427 3.82170 4.04362 4.21271 4.33106 4.36169 4.48822 4.58173 4.65840 4.68819 4.82651 4.88129 4.97058 5.01933 5.09065 5.12000 5.28075 5.35980 5.48161 5.59738 5.84821 6.24457 6.65039 7.28971 7.60051 8.86566 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027555 B = 0.011992 C = 0.009259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.891194 B = 2334.243393 C = 3023.307093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.148 4.148 4 N -0.265 5.265 5 N -0.114 5.114 6 N -0.288 5.288 7 C -0.077 4.077 8 C -0.013 4.013 9 C 0.088 3.912 10 H 0.058 0.942 11 C -0.520 4.520 12 H 0.033 0.967 13 C 0.024 3.976 14 N -0.943 5.943 15 Si 0.935 3.065 16 H -0.255 1.255 17 H -0.297 1.297 18 H -0.235 1.235 19 C -0.120 4.120 20 C -0.018 4.018 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.037 0.963 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.268 0.732 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 6.058 4.169 8.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.206 4.206 4 N -0.058 5.058 5 N -0.091 5.091 6 N -0.153 5.153 7 C -0.216 4.216 8 C -0.147 4.147 9 C 0.067 3.933 10 H 0.076 0.924 11 C -0.558 4.558 12 H 0.051 0.949 13 C -0.174 4.174 14 N -0.582 5.582 15 Si 0.758 3.242 16 H -0.180 1.180 17 H -0.224 1.224 18 H -0.158 1.158 19 C -0.159 4.159 20 C -0.057 4.057 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.056 0.944 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.856 7.039 4.950 9.067 hybrid contribution 0.533 -1.133 -1.194 1.730 sum 3.389 5.907 3.756 7.777 Atomic orbital electron populations 1.22061 0.91599 1.02211 1.04906 1.22064 0.97179 0.95270 0.83012 1.22096 1.01497 0.91934 1.05051 1.46984 1.32099 1.19050 1.07667 1.78135 1.22401 1.22151 0.86397 1.74435 1.10883 1.03615 1.26414 1.23318 1.05608 1.01948 0.90725 1.23303 0.98683 0.92233 1.00512 1.18442 0.94334 0.88843 0.91693 0.92409 1.20952 1.00500 1.24477 1.09904 0.94897 1.25780 1.01447 0.96172 0.94013 1.70032 1.38870 1.32980 1.16292 0.86010 0.80136 0.80568 0.77437 1.17975 1.22390 1.15801 1.22826 1.02061 0.97601 0.93424 1.20440 0.97640 0.89446 0.98139 0.90936 0.87096 0.94405 0.87751 0.92552 0.86978 0.91116 0.92339 0.91341 0.89353 0.88965 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.40 71.99 0.68 -3.76 16 2 C 0.13 4.18 3.65 45.00 0.16 4.34 16 3 C -0.15 -3.73 9.39 71.98 0.68 -3.05 16 4 N -0.27 -10.75 3.06 -313.79 -0.96 -11.72 16 5 N -0.11 -4.77 12.89 37.02 0.48 -4.30 16 6 N -0.29 -12.51 12.41 -48.31 -0.60 -13.11 16 7 C -0.08 -3.16 8.12 41.69 0.34 -2.82 16 8 C -0.01 -0.54 6.89 41.46 0.29 -0.26 16 9 C 0.09 3.83 2.32 -11.66 -0.03 3.80 16 10 H 0.06 2.46 7.18 -2.38 -0.02 2.44 16 11 C -0.52 -27.32 8.65 25.60 0.22 -27.09 16 12 H 0.03 1.94 7.70 -2.91 -0.02 1.92 16 13 C 0.02 1.30 5.46 84.66 0.46 1.76 16 14 N -0.94 -54.93 13.96 21.45 0.30 -54.63 16 15 Si 0.93 39.32 24.71 68.60 1.70 41.01 16 16 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 17 H -0.30 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.23 -8.79 6.40 99.48 0.64 -8.15 16 19 C -0.12 -4.49 5.01 31.61 0.16 -4.33 16 20 C -0.02 -0.58 6.78 30.49 0.21 -0.37 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 3.88 7.37 -2.39 -0.02 3.86 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.27 14.65 8.31 -92.70 -0.77 13.87 16 29 H 0.07 2.74 7.91 -2.39 -0.02 2.72 16 30 H 0.09 2.89 5.84 -2.39 -0.01 2.88 16 31 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 Total: -1.00 -65.00 262.75 5.11 -59.89 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.03 Total: 14.63 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.16 Total: -31.78 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -0.78 Total: -83.75 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.70 Total: 41.01 kcal Total: -65.00 5.11 -59.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.794 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds