Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33473 * 125.49829 * 2 1 4 4 C 1.30331 * 109.72363 * 179.97438 * 3 2 1 5 5 N 1.34775 * 108.11380 * 359.94873 * 4 3 2 6 6 N 1.31234 * 125.51629 * 179.97438 * 2 1 3 7 7 C 1.46293 * 125.07270 * 180.02562 * 5 4 3 8 8 C 1.53302 * 108.77599 * 17.04713 * 7 5 4 9 9 H 1.08997 * 109.46988 * 69.89329 * 8 7 5 10 10 C 1.53004 * 109.46722 * 189.87682 * 8 7 5 11 11 C 1.50703 * 109.46741 * 295.02451 * 10 8 7 12 12 H 1.07995 * 120.00525 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99685 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00222 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00149 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46824 * 60.00166 * 15 13 11 17 17 H 1.48500 * 109.47319 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47012 * 300.00448 * 15 13 11 19 19 C 1.53157 * 109.49714 * 309.88079 * 8 7 5 20 20 C 1.50927 * 127.90165 * 179.97438 * 4 3 2 21 21 H 1.09006 * 109.47002 * 89.97500 * 1 2 3 22 22 H 1.08995 * 109.47547 * 209.97835 * 1 2 3 23 23 H 1.09004 * 109.47261 * 329.98344 * 1 2 3 24 24 H 1.09001 * 109.58593 * 257.25902 * 7 5 4 25 25 H 1.08998 * 109.58352 * 136.83245 * 7 5 4 26 26 H 1.09000 * 109.47174 * 55.01967 * 10 8 7 27 27 H 1.09001 * 109.47322 * 175.02675 * 10 8 7 28 28 H 0.96998 * 120.00307 * 179.97438 * 14 13 11 29 29 H 1.08994 * 109.50816 * 309.24102 * 19 8 7 30 30 H 1.08999 * 109.51131 * 189.10316 * 19 8 7 31 31 H 1.09002 * 109.72088 * 76.31811 * 20 4 3 32 32 H 1.09001 * 109.71714 * 315.71449 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7323 0.0005 5 7 3.5912 -0.6143 0.0021 6 7 2.2693 -1.0682 0.0005 7 6 4.8218 -1.4053 0.0036 8 6 5.9870 -0.5044 0.4288 9 1 5.8871 -0.2555 1.4853 10 6 7.3094 -1.2396 0.2012 11 6 7.3800 -2.4393 1.1105 12 1 6.5636 -2.6556 1.7836 13 6 8.4869 -3.2610 1.0829 14 7 9.4813 -2.9974 0.2636 15 14 8.5748 -4.7477 2.2104 16 1 7.4424 -5.6614 1.9138 17 1 9.8582 -5.4614 1.9895 18 1 8.4939 -4.3020 3.6246 19 6 5.9685 0.7817 -0.4026 20 6 4.7522 1.6264 0.0002 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8901 0.5135 23 1 -0.3634 0.8899 0.5141 24 1 5.0073 -1.7945 -0.9975 25 1 4.7238 -2.2322 0.7071 26 1 7.3694 -1.5664 -0.8369 27 1 8.1404 -0.5688 0.4197 28 1 10.2602 -3.5752 0.2445 29 1 5.9032 0.5300 -1.4611 30 1 6.8816 1.3477 -0.2181 31 1 4.9046 2.0405 0.9969 32 1 4.6136 2.4355 -0.7168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = 59.055314 kcal Electronic energy + Delta-G solvation = -14837.131274 eV Core-core repulsion = 12412.350084 eV Total energy + Delta-G solvation = -2424.781189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.94821 -37.22215 -33.33710 -32.86513 -31.77196 -29.79711 -28.59746 -26.24181 -24.04947 -22.84580 -20.96927 -20.16051 -18.82132 -16.58081 -16.12957 -15.70008 -14.75979 -14.62634 -13.88336 -13.77518 -13.56661 -13.05456 -12.69055 -12.44338 -12.04267 -11.89638 -11.68562 -11.34277 -11.19942 -10.80617 -10.65529 -10.52888 -10.12451 -9.74945 -9.50967 -9.34305 -9.16547 -8.90525 -8.49298 -6.13776 -4.17913 1.95819 2.73190 3.12697 3.26294 3.31371 3.33884 4.18841 4.35198 4.72480 4.93062 5.11119 5.21046 5.25397 5.32519 5.59159 5.63820 5.69250 5.81098 5.88074 5.92452 6.10002 6.18492 6.41737 6.55566 6.63989 6.71951 6.77122 7.21202 7.45380 7.53782 7.82354 8.21094 8.45309 8.87187 9.47949 10.96875 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041606 B = 0.006819 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.825141 B = 4105.112997 C = 4629.120566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.200 3.800 3 N -0.550 5.550 4 C 0.276 3.724 5 N -0.363 5.363 6 N -0.323 5.323 7 C 0.138 3.862 8 C -0.094 4.094 9 H 0.072 0.928 10 C 0.033 3.967 11 C -0.530 4.530 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.125 4.125 20 C -0.041 4.041 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 7.082 -1.150 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 N -0.280 5.280 4 C 0.000 4.000 5 N -0.153 5.153 6 N -0.153 5.153 7 C 0.018 3.982 8 C -0.114 4.114 9 H 0.090 0.910 10 C -0.005 4.005 11 C -0.568 4.568 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.163 4.163 20 C -0.080 4.080 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.041 0.959 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.223 6.517 -1.212 12.184 hybrid contribution 0.411 -0.997 0.604 1.236 sum -9.812 5.521 -0.608 11.275 Atomic orbital electron populations 1.19981 0.84437 1.03510 1.03180 1.24373 0.98004 0.85908 0.99845 1.70107 1.00056 1.31035 1.26787 1.24302 0.94730 0.84481 0.96520 1.50580 1.05950 1.06158 1.52602 1.77952 0.87334 1.22773 1.27197 1.22200 0.77497 0.94668 1.03879 1.21714 0.96612 0.93683 0.99399 0.90957 1.19111 0.88874 0.94820 0.97649 1.21163 1.03540 1.10066 1.22048 0.92615 1.24981 0.95627 0.97867 0.95516 1.69930 1.07405 1.38569 1.37090 0.86671 0.77394 0.82840 0.81249 1.20158 1.21178 1.20174 1.21884 0.97032 0.96699 1.00641 1.20440 0.87670 0.95857 1.04055 0.90369 0.90390 0.90002 0.89609 0.88132 0.95930 0.95242 0.92727 0.91455 0.89610 0.88662 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.61 10.51 36.00 0.38 -0.23 16 2 C 0.20 3.43 8.16 -156.21 -1.27 2.15 16 3 N -0.55 -9.82 11.18 -7.95 -0.09 -9.91 16 4 C 0.28 4.78 7.72 -155.69 -1.20 3.58 16 5 N -0.36 -6.81 4.04 -58.27 -0.24 -7.04 16 6 N -0.32 -6.18 12.75 32.54 0.41 -5.76 16 7 C 0.14 2.58 6.23 -4.00 -0.02 2.55 16 8 C -0.09 -1.73 2.16 -90.38 -0.19 -1.92 16 9 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 10 C 0.03 0.76 4.43 -27.88 -0.12 0.63 16 11 C -0.53 -13.76 8.53 -34.44 -0.29 -14.05 16 12 H 0.06 1.42 7.10 -52.49 -0.37 1.04 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 15 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.12 -1.85 5.26 -26.41 -0.14 -1.99 16 20 C -0.04 -0.55 6.33 -27.53 -0.17 -0.73 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 25 H 0.10 1.99 7.29 -51.93 -0.38 1.61 16 26 H 0.02 0.55 8.12 -51.93 -0.42 0.12 16 27 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 30 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -30.35 269.02 -7.81 -38.16 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.53 Total: -2.32 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.14 Total: -8.42 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.83 Total: -47.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.35 -7.81 -38.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.217 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds