Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28906 * 109.74354 * 179.83056 * 3 2 1 5 5 C 1.29838 * 109.47444 * 0.39309 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46256 * 128.84769 * 0.10274 * 6 2 1 8 8 C 1.53317 * 108.73124 * 162.93218 * 7 6 2 9 9 C 1.53149 * 109.58836 * 50.26688 * 8 7 6 10 10 H 1.08995 * 109.52873 * 50.52654 * 9 8 7 11 11 C 1.52996 * 109.49893 * 170.61874 * 9 8 7 12 12 C 1.50700 * 109.46846 * 184.82444 * 11 9 8 13 13 H 1.07996 * 120.00023 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00274 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99733 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00322 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47120 * 60.00243 * 16 14 12 18 18 H 1.48505 * 109.46929 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46979 * 300.00012 * 16 14 12 20 20 C 1.50800 * 128.52334 * 179.89447 * 5 4 3 21 21 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 24 24 H 1.08996 * 109.59548 * 282.70331 * 7 6 2 25 25 H 1.08993 * 109.59507 * 43.16199 * 7 6 2 26 26 H 1.09009 * 109.45350 * 290.23306 * 8 7 6 27 27 H 1.08995 * 109.43524 * 170.29256 * 8 7 6 28 28 H 1.08998 * 109.46893 * 304.81934 * 11 9 8 29 29 H 1.09001 * 109.47475 * 64.82756 * 11 9 8 30 30 H 0.97003 * 119.99664 * 180.02562 * 15 14 12 31 31 H 1.09007 * 109.73103 * 283.68711 * 20 5 4 32 32 H 1.09000 * 109.73120 * 44.32255 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0036 5 6 3.5815 -0.6156 -0.0024 6 7 2.3075 -1.0833 -0.0059 7 6 1.9366 -2.4980 -0.0156 8 6 3.1550 -3.3234 -0.4454 9 6 4.3720 -2.9157 0.3901 10 1 4.1110 -2.9361 1.4481 11 6 5.5211 -3.8915 0.1287 12 6 6.6770 -3.5614 1.0375 13 1 6.5999 -2.7378 1.7317 14 6 7.8329 -4.3109 0.9827 15 7 7.9270 -5.3136 0.1368 16 14 9.2655 -3.9022 2.1097 17 1 8.8303 -4.0170 3.5249 18 1 10.3808 -4.8493 1.8558 19 1 9.7243 -2.5151 1.8438 20 6 4.8051 -1.4970 -0.0035 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3633 -0.8872 -0.5187 23 1 -0.3633 0.8928 -0.5090 24 1 1.6240 -2.8008 0.9837 25 1 1.1204 -2.6570 -0.7202 26 1 3.3620 -3.1429 -1.5003 27 1 2.9479 -4.3825 -0.2922 28 1 5.1846 -4.9097 0.3240 29 1 5.8401 -3.8072 -0.9102 30 1 8.7401 -5.8411 0.0985 31 1 5.2481 -1.5105 -0.9994 32 1 5.5309 -1.1200 0.7170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = 34.042589 kcal Electronic energy + Delta-G solvation = -14949.493941 eV Core-core repulsion = 12523.628118 eV Total energy + Delta-G solvation = -2425.865823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.26639 -38.71610 -35.80876 -34.56433 -32.86535 -31.22788 -29.66589 -27.81116 -25.98493 -24.39743 -22.27555 -22.04538 -20.32900 -18.52303 -17.67503 -17.42307 -16.55936 -15.93035 -15.37267 -15.20354 -14.82229 -14.40173 -14.00827 -13.81999 -13.39202 -13.34293 -13.09971 -12.98085 -12.67142 -12.38567 -12.36895 -12.08588 -11.76726 -11.33570 -11.17506 -11.03560 -10.92503 -10.52314 -9.96287 -8.17756 -6.26005 0.87037 1.41925 1.43364 1.50639 1.60697 1.81507 2.42591 3.15771 3.27055 3.56823 3.59845 3.80171 3.81917 4.19009 4.31819 4.36838 4.49125 4.70362 4.73962 4.81933 4.90171 4.96982 5.03452 5.12445 5.18644 5.21808 5.30422 5.51868 5.71878 5.86116 6.03193 6.27101 6.89260 7.42848 7.73570 8.93219 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049798 B = 0.006710 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.132215 B = 4171.642241 C = 4559.651012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.177 3.823 3 N -0.353 5.353 4 N -0.343 5.343 5 C 0.180 3.820 6 N -0.467 5.467 7 C 0.105 3.895 8 C -0.127 4.127 9 C -0.074 4.074 10 H 0.063 0.937 11 C 0.037 3.963 12 C -0.535 4.535 13 H 0.057 0.943 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.951 3.049 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.014 4.014 21 H 0.102 0.898 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.006 0.994 29 H -0.001 1.001 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 2.928 -0.578 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.091 4.091 3 N -0.193 5.193 4 N -0.182 5.182 5 C -0.089 4.089 6 N -0.159 5.159 7 C -0.016 4.016 8 C -0.165 4.165 9 C -0.093 4.093 10 H 0.081 0.919 11 C 0.000 4.000 12 C -0.573 4.573 13 H 0.075 0.925 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.776 3.224 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.054 4.054 21 H 0.120 0.880 22 H 0.125 0.875 23 H 0.118 0.882 24 H 0.126 0.874 25 H 0.149 0.851 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.024 0.976 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.572 4.227 -0.635 16.148 hybrid contribution 1.067 -1.156 0.455 1.638 sum -14.505 3.071 -0.180 14.828 Atomic orbital electron populations 1.20445 0.79840 1.06082 1.05487 1.25581 0.98854 0.82246 1.02467 1.74299 0.96411 1.26109 1.22495 1.73924 1.13263 1.09888 1.21127 1.25049 0.88612 0.91970 1.03301 1.46275 1.05877 1.10015 1.53693 1.22401 0.99518 0.74039 1.05651 1.22001 0.92794 1.01429 1.00269 1.21184 0.95879 0.93058 0.99193 0.91887 1.18979 0.91958 0.93628 0.95447 1.21615 1.00077 1.14747 1.20881 0.92484 1.25782 1.01309 0.95015 0.97004 1.70051 1.28578 1.20361 1.38002 0.85718 0.78969 0.78099 0.79599 1.19432 1.20998 1.19734 1.20145 0.89824 0.92081 1.03302 0.87993 0.87520 0.88230 0.87363 0.85056 0.91324 0.87437 0.97573 0.98307 0.92887 0.89893 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.29 71.24 0.73 -0.11 16 2 C 0.18 4.88 8.07 138.14 1.11 6.00 16 3 N -0.35 -13.13 12.23 -50.46 -0.62 -13.75 16 4 N -0.34 -14.22 12.21 -50.28 -0.61 -14.83 16 5 C 0.18 6.59 7.75 138.14 1.07 7.66 16 6 N -0.47 -13.23 3.11 -504.68 -1.57 -14.80 16 7 C 0.10 2.03 6.75 86.53 0.58 2.61 16 8 C -0.13 -3.29 5.24 30.75 0.16 -3.13 16 9 C -0.07 -2.66 2.16 -10.59 -0.02 -2.69 16 10 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 11 C 0.04 1.75 4.43 29.85 0.13 1.88 16 12 C -0.54 -28.60 8.55 25.60 0.22 -28.39 16 13 H 0.06 2.98 7.12 -2.91 -0.02 2.96 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 16 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 C -0.01 -0.53 5.24 30.04 0.16 -0.37 16 21 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.11 0.85 7.76 -2.39 -0.02 0.83 16 23 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.13 1.52 7.85 -2.39 -0.02 1.50 16 26 H 0.07 1.83 8.12 -2.38 -0.02 1.81 16 27 H 0.11 2.45 8.11 -2.39 -0.02 2.43 16 28 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 29 H 0.00 -0.07 8.12 -2.39 -0.02 -0.09 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.08 3.21 8.09 -2.38 -0.02 3.19 16 32 H 0.08 3.39 7.37 -2.39 -0.02 3.37 16 Total: -1.00 -71.09 267.14 5.22 -65.87 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.10 Total: 1.62 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.61 Total: -15.68 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -2.52 Total: -97.35 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.09 5.22 -65.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.910 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds