Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 126.46459 * 2 1 4 4 N 1.28904 * 109.74009 * 180.31630 * 3 2 1 5 5 C 1.29832 * 109.47914 * 359.62981 * 4 3 2 6 6 N 1.34689 * 126.46482 * 180.02562 * 2 1 3 7 7 C 1.46261 * 128.85095 * 359.82517 * 6 2 1 8 8 C 1.53314 * 108.73092 * 197.10291 * 7 6 2 9 9 C 1.53141 * 109.57958 * 309.70237 * 8 7 6 10 10 C 1.50806 * 128.52555 * 180.02562 * 5 4 3 11 11 H 1.09002 * 109.72810 * 76.47281 * 10 5 4 12 12 C 1.52998 * 109.72624 * 315.83864 * 10 5 4 13 13 C 1.50707 * 109.47309 * 65.00163 * 12 10 5 14 14 H 1.07996 * 119.99331 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00273 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99901 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00054 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47593 * 59.99823 * 17 15 13 19 19 H 1.48501 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47111 * 299.99480 * 17 15 13 21 21 H 1.08998 * 109.47434 * 269.96000 * 1 2 3 22 22 H 1.09001 * 109.47295 * 29.96009 * 1 2 3 23 23 H 1.09004 * 109.46821 * 149.95559 * 1 2 3 24 24 H 1.09006 * 109.59388 * 77.32666 * 7 6 2 25 25 H 1.09003 * 109.71584 * 316.95147 * 7 6 2 26 26 H 1.08997 * 109.45641 * 189.67299 * 8 7 6 27 27 H 1.09004 * 109.45117 * 69.73103 * 8 7 6 28 28 H 1.09006 * 109.50076 * 309.48251 * 9 8 7 29 29 H 1.09003 * 109.50266 * 189.38369 * 9 8 7 30 30 H 1.09007 * 109.47040 * 184.99765 * 12 10 5 31 31 H 1.08997 * 109.47734 * 304.99884 * 12 10 5 32 32 H 0.96998 * 119.99454 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0067 5 6 3.5816 -0.6155 -0.0033 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0024 8 6 3.1554 -3.3255 0.4275 9 6 4.3717 -2.9139 -0.4071 10 6 4.8051 -1.4970 -0.0079 11 1 5.2498 -1.5145 0.9871 12 6 5.8222 -0.9635 -1.0188 13 6 6.3115 0.3902 -0.5724 14 1 5.9344 0.8265 0.3407 15 6 7.2405 1.0716 -1.3297 16 7 7.7001 0.5401 -2.4415 17 14 7.8475 2.7492 -0.7760 18 1 8.4908 2.6278 0.5568 19 1 8.8355 3.2666 -1.7566 20 1 6.6992 3.6868 -0.6880 21 1 -0.3634 -0.0007 1.0276 22 1 -0.3634 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5146 24 1 1.6237 -2.7959 -0.9984 25 1 1.1199 -2.6627 0.7050 26 1 2.9485 -4.3840 0.2698 27 1 3.3632 -3.1497 1.4830 28 1 4.1092 -2.9294 -1.4649 29 1 5.1905 -3.6099 -0.2247 30 1 6.6653 -1.6514 -1.0835 31 1 5.3499 -0.8746 -1.9971 32 1 8.3534 1.0197 -2.9744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = 62.551830 kcal Electronic energy + Delta-G solvation = -15295.156936 eV Core-core repulsion = 12870.527367 eV Total energy + Delta-G solvation = -2424.629569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.65685 -37.06662 -34.49740 -32.42578 -31.08011 -30.57177 -27.03482 -26.85653 -23.97605 -22.33465 -21.60080 -20.22625 -18.98453 -16.50678 -16.09431 -15.87624 -14.73016 -14.34948 -14.08298 -13.85587 -13.39862 -13.06916 -12.91744 -12.46458 -12.21506 -11.50007 -11.31014 -11.09175 -10.85977 -10.72396 -10.63778 -10.37685 -10.11943 -9.67326 -9.56957 -9.18587 -8.93893 -8.23238 -8.16977 -5.81194 -3.78174 2.40548 2.94477 3.52000 3.54196 3.63458 3.65535 4.50391 4.65445 4.69517 4.73907 4.93965 5.04268 5.18136 5.30017 5.45504 5.50969 5.56821 5.65630 5.78064 5.83311 5.95258 6.14774 6.35211 6.46467 6.57344 6.83317 6.86472 7.44687 7.67486 7.75063 8.19878 8.55803 9.26909 9.54337 9.84485 11.31094 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.009558 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.709591 B = 2928.856295 C = 3588.521952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.144 3.856 3 N -0.308 5.308 4 N -0.253 5.253 5 C 0.209 3.791 6 N -0.482 5.482 7 C 0.108 3.892 8 C -0.134 4.134 9 C -0.124 4.124 10 C -0.002 4.002 11 H 0.087 0.913 12 C 0.036 3.964 13 C -0.492 4.492 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.907 5.907 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.274 1.274 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.017 0.983 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -9.898 5.118 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 N -0.149 5.149 4 N -0.090 5.090 5 C -0.058 4.058 6 N -0.176 5.176 7 C -0.015 4.015 8 C -0.172 4.172 9 C -0.162 4.162 10 C -0.023 4.023 11 H 0.105 0.895 12 C -0.002 4.002 13 C -0.531 4.531 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.548 5.548 17 Si 0.720 3.280 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.200 1.200 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.698 -8.391 4.979 16.014 hybrid contribution -0.133 -0.408 0.096 0.439 sum -12.831 -8.799 5.075 16.365 Atomic orbital electron populations 1.20039 0.84739 1.03715 1.03072 1.24464 0.96540 0.83811 1.07424 1.74558 0.97277 1.24082 1.19028 1.74426 1.09444 1.08301 1.16822 1.25026 0.85836 0.92588 1.02322 1.46093 1.07470 1.07700 1.56309 1.21865 0.99035 0.77856 1.02754 1.21937 0.94461 0.99438 1.01381 1.21849 0.97058 0.97401 0.99923 1.20198 0.89775 0.89122 1.03180 0.89467 1.19118 0.91792 0.96729 0.92520 1.21180 1.21629 1.01733 1.08548 0.91490 1.24927 0.96770 0.97771 0.95026 1.69959 1.31660 1.38489 1.14708 0.86649 0.78340 0.85073 0.77950 1.20505 1.21791 1.19952 0.90464 0.89256 0.91250 0.90004 0.89588 0.89710 0.90861 0.91403 0.90134 0.95398 0.96506 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.29 36.01 0.37 -0.26 16 2 C 0.14 2.54 8.07 -155.45 -1.25 1.28 16 3 N -0.31 -6.99 12.23 32.70 0.40 -6.59 16 4 N -0.25 -6.40 10.36 32.76 0.34 -6.06 16 5 C 0.21 4.50 6.96 -155.30 -1.08 3.42 16 6 N -0.48 -8.22 3.11 -110.86 -0.35 -8.56 16 7 C 0.11 1.24 6.74 -4.01 -0.03 1.21 16 8 C -0.13 -1.48 5.94 -26.50 -0.16 -1.64 16 9 C -0.12 -1.84 5.28 -26.43 -0.14 -1.98 16 10 C 0.00 -0.04 2.54 -91.49 -0.23 -0.27 16 11 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 12 C 0.04 0.93 4.45 -27.88 -0.12 0.80 16 13 C -0.49 -14.38 7.94 -34.44 -0.27 -14.65 16 14 H 0.07 1.99 6.93 -52.49 -0.36 1.62 16 15 C 0.05 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.91 -28.18 13.29 55.43 0.74 -27.44 16 17 Si 0.89 23.49 29.54 -169.99 -5.02 18.46 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.27 -7.36 7.11 56.52 0.40 -6.96 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 28 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -35.87 266.27 -7.46 -43.33 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -4.56 Total: -6.59 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.02 Total: -10.56 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.13 Total: -48.65 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.87 -7.46 -43.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.881 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds