Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30839 * 126.46459 * 2 1 4 4 N 1.28904 * 109.74009 * 180.31630 * 3 2 1 5 5 C 1.29832 * 109.47914 * 359.62981 * 4 3 2 6 6 N 1.34689 * 126.46482 * 180.02562 * 2 1 3 7 7 C 1.46261 * 128.85095 * 359.82517 * 6 2 1 8 8 C 1.53314 * 108.73092 * 197.10291 * 7 6 2 9 9 C 1.53141 * 109.57958 * 309.70237 * 8 7 6 10 10 C 1.50806 * 128.52555 * 180.02562 * 5 4 3 11 11 H 1.09002 * 109.72810 * 76.47281 * 10 5 4 12 12 C 1.52998 * 109.72624 * 315.83864 * 10 5 4 13 13 C 1.50707 * 109.47309 * 65.00163 * 12 10 5 14 14 H 1.07996 * 119.99331 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00273 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99901 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00054 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47593 * 59.99823 * 17 15 13 19 19 H 1.48501 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47111 * 299.99480 * 17 15 13 21 21 H 1.08998 * 109.47434 * 269.96000 * 1 2 3 22 22 H 1.09001 * 109.47295 * 29.96009 * 1 2 3 23 23 H 1.09004 * 109.46821 * 149.95559 * 1 2 3 24 24 H 1.09006 * 109.59388 * 77.32666 * 7 6 2 25 25 H 1.09003 * 109.71584 * 316.95147 * 7 6 2 26 26 H 1.08997 * 109.45641 * 189.67299 * 8 7 6 27 27 H 1.09004 * 109.45117 * 69.73103 * 8 7 6 28 28 H 1.09006 * 109.50076 * 309.48251 * 9 8 7 29 29 H 1.09003 * 109.50266 * 189.38369 * 9 8 7 30 30 H 1.09007 * 109.47040 * 184.99765 * 12 10 5 31 31 H 1.08997 * 109.47734 * 304.99884 * 12 10 5 32 32 H 0.96998 * 119.99454 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0067 5 6 3.5816 -0.6155 -0.0033 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0024 8 6 3.1554 -3.3255 0.4275 9 6 4.3717 -2.9139 -0.4071 10 6 4.8051 -1.4970 -0.0079 11 1 5.2498 -1.5145 0.9871 12 6 5.8222 -0.9635 -1.0188 13 6 6.3115 0.3902 -0.5724 14 1 5.9344 0.8265 0.3407 15 6 7.2405 1.0716 -1.3297 16 7 7.7001 0.5401 -2.4415 17 14 7.8475 2.7492 -0.7760 18 1 8.4908 2.6278 0.5568 19 1 8.8355 3.2666 -1.7566 20 1 6.6992 3.6868 -0.6880 21 1 -0.3634 -0.0007 1.0276 22 1 -0.3634 0.8903 -0.5132 23 1 -0.3633 -0.8896 -0.5146 24 1 1.6237 -2.7959 -0.9984 25 1 1.1199 -2.6627 0.7050 26 1 2.9485 -4.3840 0.2698 27 1 3.3632 -3.1497 1.4830 28 1 4.1092 -2.9294 -1.4649 29 1 5.1905 -3.6099 -0.2247 30 1 6.6653 -1.6514 -1.0835 31 1 5.3499 -0.8746 -1.9971 32 1 8.3534 1.0197 -2.9744 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = 38.911522 kcal Electronic energy + Delta-G solvation = -15296.182057 eV Core-core repulsion = 12870.527367 eV Total energy + Delta-G solvation = -2425.654690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.10530 -38.37317 -36.11865 -34.39031 -32.34336 -32.03414 -28.78988 -28.11996 -25.66708 -23.77933 -23.21463 -21.63011 -20.31202 -18.42591 -17.46610 -17.41141 -16.51596 -16.12630 -15.27201 -15.07334 -14.63372 -14.45729 -14.03368 -13.78520 -13.47596 -13.16098 -13.05596 -12.86846 -12.45151 -12.32809 -12.28989 -11.99945 -11.72413 -11.43991 -11.09026 -10.86774 -10.82414 -10.49885 -9.80778 -8.12950 -6.14984 1.02719 1.35920 1.41508 1.49665 1.73409 2.07300 2.46823 3.21852 3.40904 3.65535 3.67514 3.82592 3.92069 4.21840 4.35648 4.39962 4.56293 4.71499 4.73053 4.83221 4.94207 4.99002 5.02961 5.15682 5.18783 5.30906 5.39139 5.51338 5.64124 5.88532 6.22155 6.33476 6.96493 7.50199 8.01535 8.99280 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.009558 C = 0.007801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.709591 B = 2928.856295 C = 3588.521952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.165 3.835 3 N -0.369 5.369 4 N -0.322 5.322 5 C 0.191 3.809 6 N -0.475 5.475 7 C 0.095 3.905 8 C -0.125 4.125 9 C -0.118 4.118 10 C 0.002 3.998 11 H 0.085 0.915 12 C 0.044 3.956 13 C -0.499 4.499 14 H 0.056 0.944 15 C -0.001 4.001 16 N -0.939 5.939 17 Si 0.949 3.051 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.285 1.285 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.016 0.984 31 H -0.019 1.019 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 -11.899 6.138 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 N -0.210 5.210 4 N -0.158 5.158 5 C -0.079 4.079 6 N -0.167 5.167 7 C -0.026 4.026 8 C -0.162 4.162 9 C -0.156 4.156 10 C -0.019 4.019 11 H 0.103 0.897 12 C 0.007 3.993 13 C -0.537 4.537 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.581 5.581 17 Si 0.776 3.224 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.211 1.211 21 H 0.122 0.878 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.120 0.880 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.035 0.965 31 H -0.001 1.001 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.981 -10.421 6.011 19.214 hybrid contribution 0.470 0.174 -0.225 0.549 sum -14.511 -10.248 5.786 18.683 Atomic orbital electron populations 1.20371 0.79942 1.05657 1.05351 1.25582 0.98758 0.82806 1.03206 1.74392 0.97181 1.26885 1.22538 1.74235 1.11546 1.10909 1.19158 1.24975 0.87910 0.91997 1.02971 1.46349 1.05608 1.09952 1.54810 1.22469 1.00449 0.74331 1.05350 1.21945 0.92049 1.01833 1.00361 1.21800 0.99801 0.93844 1.00194 1.20045 0.88481 0.92211 1.01189 0.89690 1.18906 0.92678 0.95366 0.92394 1.21501 1.21017 1.03225 1.07973 0.92623 1.25719 0.97362 1.01283 0.95325 1.70060 1.32462 1.39896 1.15707 0.85737 0.77581 0.80693 0.78433 1.18945 1.20596 1.21137 0.87804 0.89042 0.87565 0.87959 0.85330 0.85125 0.90728 0.92259 0.88602 0.96535 1.00060 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.00 10.29 71.24 0.73 -0.27 16 2 C 0.16 5.52 8.07 138.14 1.11 6.63 16 3 N -0.37 -17.10 12.23 -50.46 -0.62 -17.72 16 4 N -0.32 -16.89 10.36 -50.27 -0.52 -17.41 16 5 C 0.19 8.30 6.96 138.14 0.96 9.26 16 6 N -0.47 -15.20 3.11 -504.64 -1.57 -16.77 16 7 C 0.09 1.70 6.74 86.53 0.58 2.28 16 8 C -0.12 -2.19 5.94 30.75 0.18 -2.01 16 9 C -0.12 -3.30 5.28 30.79 0.16 -3.14 16 10 C 0.00 0.07 2.54 -11.36 -0.03 0.04 16 11 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 12 C 0.04 2.38 4.45 29.85 0.13 2.52 16 13 C -0.50 -30.37 7.94 25.60 0.20 -30.16 16 14 H 0.06 3.46 6.93 -2.91 -0.02 3.44 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.94 -60.14 13.29 21.45 0.28 -59.86 16 17 Si 0.95 49.64 29.54 68.60 2.03 51.67 16 18 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 20 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 21 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.11 1.22 8.04 -2.38 -0.02 1.20 16 24 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 25 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 28 H 0.06 1.75 8.09 -2.38 -0.02 1.73 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 31 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 32 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -84.81 266.27 5.20 -79.60 By element: Atomic # 1 Polarization: -6.17 SS G_CDS: 1.10 Total: -5.07 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.51 Total: -14.44 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -2.42 Total: -111.76 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.03 Total: 51.67 kcal Total: -84.81 5.20 -79.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.513 kcal (2) G-P(sol) polarization free energy of solvation -84.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds