Wall clock time and date at job start Mon Mar 30 2020 03:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.69808 * 2 1 4 4 C 1.53303 * 109.58733 * 239.64168 * 2 1 3 5 5 C 1.53175 * 109.52986 * 190.09705 * 4 2 1 6 6 C 1.53424 * 109.24866 * 69.10981 * 5 4 2 7 7 C 1.50929 * 108.23216 * 311.36747 * 6 5 4 8 8 N 1.30333 * 127.89741 * 195.92887 * 7 6 5 9 9 C 1.33471 * 109.72189 * 179.97438 * 8 7 6 10 10 C 1.50704 * 125.49686 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46934 * 269.97553 * 10 9 8 12 12 H 1.08005 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00098 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99637 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99940 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47307 * 89.99638 * 15 13 11 17 17 H 1.48502 * 109.46670 * 209.99643 * 15 13 11 18 18 H 1.48494 * 109.47128 * 329.99434 * 15 13 11 19 19 N 1.30977 * 109.00626 * 0.02562 * 9 8 7 20 20 N 1.34674 * 124.05427 * 15.93424 * 7 6 5 21 21 H 1.09002 * 109.47452 * 299.64699 * 1 2 3 22 22 H 1.08995 * 109.47412 * 59.64836 * 1 2 3 23 23 H 1.09003 * 109.47178 * 179.64969 * 1 2 3 24 24 H 1.08996 * 109.46716 * 310.08837 * 4 2 1 25 25 H 1.09002 * 109.46699 * 70.07486 * 4 2 1 26 26 H 1.09002 * 109.47442 * 309.19822 * 5 4 2 27 27 H 1.09007 * 109.54306 * 189.06356 * 5 4 2 28 28 H 1.09002 * 109.71882 * 191.66911 * 6 5 4 29 29 H 1.09001 * 109.71839 * 71.06601 * 6 5 4 30 30 H 1.08999 * 109.47141 * 29.97288 * 10 9 8 31 31 H 1.08999 * 109.46952 * 149.97578 * 10 9 8 32 32 H 0.97007 * 119.99713 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0439 -0.7300 -1.2463 5 6 3.5546 -0.9514 -1.1235 6 6 3.8269 -1.9798 -0.0180 7 6 3.0371 -1.5795 1.2043 8 7 3.1916 -1.9968 2.4293 9 6 2.2964 -1.4052 3.2229 10 6 2.1593 -1.6292 4.7069 11 6 1.1971 -2.7617 4.9572 12 1 0.7312 -3.2683 4.1249 13 6 0.9108 -3.1505 6.2487 14 7 1.4779 -2.5332 7.2621 15 14 -0.2824 -4.5539 6.5588 16 1 0.4634 -5.8373 6.6019 17 1 -0.9730 -4.3388 7.8558 18 1 -1.2860 -4.6010 5.4654 19 7 1.5562 -0.5985 2.5040 20 7 2.0204 -0.6965 1.1894 21 1 -0.3634 0.5083 0.8931 22 1 -0.3634 0.5193 -0.8868 23 1 -0.3634 -1.0277 -0.0063 24 1 1.5422 -1.6935 -1.3357 25 1 1.8357 -0.1286 -2.1312 26 1 4.0407 -0.0088 -0.8716 27 1 3.9469 -1.3223 -2.0705 28 1 4.8907 -1.9919 0.2191 29 1 3.5131 -2.9692 -0.3508 30 1 3.1329 -1.8798 5.1280 31 1 1.7824 -0.7214 5.1781 32 1 1.2767 -2.8070 8.1707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261222256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:04 Heat of formation + Delta-G solvation = 65.445703 kcal Electronic energy + Delta-G solvation = -14898.014386 eV Core-core repulsion = 12473.510304 eV Total energy + Delta-G solvation = -2424.504081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59424 -37.21562 -33.46414 -33.20696 -30.85196 -29.99437 -27.86816 -26.93481 -23.65333 -22.60745 -21.85788 -19.50514 -19.06603 -16.54070 -16.32913 -15.28879 -14.73419 -14.53111 -14.45492 -14.06072 -13.28548 -12.73585 -12.51391 -12.30931 -11.98714 -11.67467 -11.49126 -11.42028 -11.23814 -11.08123 -10.71787 -10.58305 -10.47395 -9.87371 -9.48045 -9.11506 -8.96135 -8.35623 -8.33240 -5.98521 -4.00003 2.34945 2.88622 3.36822 3.41447 3.46207 3.85602 4.32167 4.43509 4.51145 4.57957 4.59663 5.04730 5.14671 5.22123 5.37670 5.43493 5.53329 5.60781 5.66078 5.70189 5.82009 5.89461 5.98863 6.11081 6.26488 7.21672 7.29877 7.44791 7.63830 7.67901 7.97211 8.34468 9.00485 9.08015 9.61620 11.12667 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042158 B = 0.006894 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.008548 B = 4060.694289 C = 4240.496233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.037 4.037 7 C 0.252 3.748 8 N -0.535 5.535 9 C 0.264 3.736 10 C 0.104 3.896 11 C -0.504 4.504 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.328 5.328 20 N -0.391 5.391 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 4.252 -18.375 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.103 0.897 4 C -0.171 4.171 5 C -0.163 4.163 6 C -0.077 4.077 7 C -0.025 4.025 8 N -0.263 5.263 9 C -0.016 4.016 10 C 0.064 3.936 11 C -0.543 4.543 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.154 5.154 20 N -0.184 5.184 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.753 4.530 -17.829 18.479 hybrid contribution -0.670 -0.737 0.009 0.996 sum 1.083 3.793 -17.821 18.252 Atomic orbital electron populations 1.22006 0.92979 1.03219 1.03054 1.21271 0.95943 0.95787 0.81402 0.89714 1.22054 0.96508 1.01905 0.96629 1.21708 0.95794 0.99789 0.98990 1.20245 0.99665 0.99605 0.88156 1.24170 0.91050 0.91655 0.95615 1.70242 1.27862 1.28548 0.99602 1.25487 0.87574 0.89019 0.99566 1.17770 0.98937 0.98171 0.78683 1.20878 1.25221 1.16093 0.92129 0.92760 1.24938 0.96418 0.96937 0.95892 1.69952 1.43479 1.41237 0.98705 0.86468 0.81001 0.82306 0.77503 1.20521 1.21090 1.19985 1.77999 1.23884 1.26883 0.86595 1.50344 1.26378 1.34360 1.07272 0.90738 0.91193 0.92003 0.90537 0.89271 0.91109 0.89922 0.88447 0.88947 0.93480 0.93971 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.27 37.16 0.34 -1.57 16 2 C 0.16 2.07 3.77 -67.89 -0.26 1.81 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -1.21 5.26 -26.48 -0.14 -1.35 16 5 C -0.12 -1.10 5.97 -26.42 -0.16 -1.25 16 6 C -0.04 -0.45 6.33 -27.55 -0.17 -0.63 16 7 C 0.25 4.74 7.72 -155.78 -1.20 3.54 16 8 N -0.53 -12.71 11.18 -8.02 -0.09 -12.80 16 9 C 0.26 6.82 7.34 -156.43 -1.15 5.68 16 10 C 0.10 2.96 5.60 -29.03 -0.16 2.80 16 11 C -0.50 -15.19 9.09 -34.44 -0.31 -15.50 16 12 H 0.05 1.66 7.74 -52.48 -0.41 1.25 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 19 N -0.33 -7.79 12.44 32.51 0.40 -7.39 16 20 N -0.39 -7.32 3.77 -51.83 -0.20 -7.52 16 21 H 0.07 1.09 8.13 -51.93 -0.42 0.66 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.04 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -34.88 271.02 -8.00 -42.88 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.61 Total: -5.38 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -3.31 Total: -4.81 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.86 Total: -54.25 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.88 -8.00 -42.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.326 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds