Wall clock time and date at job start Mon Mar 30 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.69808 * 2 1 4 4 C 1.53303 * 109.58733 * 239.64168 * 2 1 3 5 5 C 1.53175 * 109.52986 * 190.09705 * 4 2 1 6 6 C 1.53424 * 109.24866 * 69.10981 * 5 4 2 7 7 C 1.50929 * 108.23216 * 311.36747 * 6 5 4 8 8 N 1.30333 * 127.89741 * 195.92887 * 7 6 5 9 9 C 1.33471 * 109.72189 * 179.97438 * 8 7 6 10 10 C 1.50704 * 125.49686 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46934 * 269.97553 * 10 9 8 12 12 H 1.08005 * 119.99972 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00098 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99637 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99940 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47307 * 89.99638 * 15 13 11 17 17 H 1.48502 * 109.46670 * 209.99643 * 15 13 11 18 18 H 1.48494 * 109.47128 * 329.99434 * 15 13 11 19 19 N 1.30977 * 109.00626 * 0.02562 * 9 8 7 20 20 N 1.34674 * 124.05427 * 15.93424 * 7 6 5 21 21 H 1.09002 * 109.47452 * 299.64699 * 1 2 3 22 22 H 1.08995 * 109.47412 * 59.64836 * 1 2 3 23 23 H 1.09003 * 109.47178 * 179.64969 * 1 2 3 24 24 H 1.08996 * 109.46716 * 310.08837 * 4 2 1 25 25 H 1.09002 * 109.46699 * 70.07486 * 4 2 1 26 26 H 1.09002 * 109.47442 * 309.19822 * 5 4 2 27 27 H 1.09007 * 109.54306 * 189.06356 * 5 4 2 28 28 H 1.09002 * 109.71882 * 191.66911 * 6 5 4 29 29 H 1.09001 * 109.71839 * 71.06601 * 6 5 4 30 30 H 1.08999 * 109.47141 * 29.97288 * 10 9 8 31 31 H 1.08999 * 109.46952 * 149.97578 * 10 9 8 32 32 H 0.97007 * 119.99713 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0439 -0.7300 -1.2463 5 6 3.5546 -0.9514 -1.1235 6 6 3.8269 -1.9798 -0.0180 7 6 3.0371 -1.5795 1.2043 8 7 3.1916 -1.9968 2.4293 9 6 2.2964 -1.4052 3.2229 10 6 2.1593 -1.6292 4.7069 11 6 1.1971 -2.7617 4.9572 12 1 0.7312 -3.2683 4.1249 13 6 0.9108 -3.1505 6.2487 14 7 1.4779 -2.5332 7.2621 15 14 -0.2824 -4.5539 6.5588 16 1 0.4634 -5.8373 6.6019 17 1 -0.9730 -4.3388 7.8558 18 1 -1.2860 -4.6010 5.4654 19 7 1.5562 -0.5985 2.5040 20 7 2.0204 -0.6965 1.1894 21 1 -0.3634 0.5083 0.8931 22 1 -0.3634 0.5193 -0.8868 23 1 -0.3634 -1.0277 -0.0063 24 1 1.5422 -1.6935 -1.3357 25 1 1.8357 -0.1286 -2.1312 26 1 4.0407 -0.0088 -0.8716 27 1 3.9469 -1.3223 -2.0705 28 1 4.8907 -1.9919 0.2191 29 1 3.5131 -2.9692 -0.3508 30 1 3.1329 -1.8798 5.1280 31 1 1.7824 -0.7214 5.1781 32 1 1.2767 -2.8070 8.1707 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261222256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:03 Heat of formation + Delta-G solvation = 42.212206 kcal Electronic energy + Delta-G solvation = -14899.021866 eV Core-core repulsion = 12473.510304 eV Total energy + Delta-G solvation = -2425.511561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.17473 -38.34293 -35.41741 -34.61977 -32.63082 -31.46271 -29.74461 -27.97284 -25.76490 -23.62632 -23.16652 -21.30797 -20.22525 -18.64515 -17.84628 -16.82828 -16.47618 -15.81544 -15.58132 -15.17806 -14.61055 -14.24604 -14.05554 -13.72657 -13.50558 -13.39698 -12.88999 -12.81882 -12.64516 -12.53381 -12.02078 -12.00583 -11.99096 -11.64270 -11.51910 -10.86726 -10.64773 -10.59263 -10.04402 -8.26721 -6.39216 0.76877 1.36324 1.39911 1.50336 1.55085 2.03915 2.40733 3.04282 3.16953 3.42558 3.65802 3.74550 4.06060 4.09284 4.26526 4.31068 4.50424 4.65652 4.74798 4.86061 4.94433 4.98363 5.08147 5.13129 5.15566 5.30359 5.35297 5.51765 5.61291 5.64681 6.05377 6.14390 6.65791 7.27607 7.35840 8.85141 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042158 B = 0.006894 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.008548 B = 4060.694289 C = 4240.496233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.139 3.861 3 H 0.101 0.899 4 C -0.125 4.125 5 C -0.117 4.117 6 C -0.039 4.039 7 C 0.259 3.741 8 N -0.580 5.580 9 C 0.236 3.764 10 C 0.116 3.884 11 C -0.529 4.529 12 H 0.042 0.958 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.975 3.025 16 H -0.267 1.267 17 H -0.270 1.270 18 H -0.272 1.272 19 N -0.354 5.354 20 N -0.383 5.383 21 H 0.042 0.958 22 H 0.115 0.885 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 3.800 -21.582 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.119 0.881 4 C -0.163 4.163 5 C -0.154 4.154 6 C -0.078 4.078 7 C -0.018 4.018 8 N -0.309 5.309 9 C -0.045 4.045 10 C 0.076 3.924 11 C -0.568 4.568 12 H 0.061 0.939 13 C -0.189 4.189 14 N -0.564 5.564 15 Si 0.798 3.202 16 H -0.192 1.192 17 H -0.195 1.195 18 H -0.196 1.196 19 N -0.182 5.182 20 N -0.175 5.175 21 H 0.061 0.939 22 H 0.134 0.866 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.152 0.848 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.488 4.104 -21.075 21.522 hybrid contribution -0.565 -0.503 0.894 1.170 sum 0.923 3.601 -20.181 20.521 Atomic orbital electron populations 1.21999 0.92724 1.02390 1.03705 1.22015 0.96447 0.96927 0.80736 0.88129 1.22137 0.96532 1.02060 0.95535 1.21764 0.95607 0.98854 0.99200 1.20688 0.99250 1.01624 0.86285 1.25355 0.90568 0.89909 0.95926 1.70113 1.28664 1.30400 1.01693 1.24851 0.89636 0.91176 0.98842 1.17345 0.97111 0.96702 0.81234 1.21045 1.26267 1.17063 0.92445 0.93949 1.25905 0.98091 0.99687 0.95234 1.70062 1.44445 1.42594 0.99334 0.85316 0.78413 0.78657 0.77819 1.19222 1.19506 1.19634 1.77791 1.24381 1.26728 0.89317 1.50701 1.25913 1.34145 1.06770 0.93888 0.86644 0.93574 0.90782 0.84826 0.90854 0.85694 0.87295 0.87300 0.96025 0.96462 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.27 71.98 0.67 -2.81 16 2 C 0.14 3.28 3.77 45.13 0.17 3.45 16 3 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.12 -1.68 5.26 30.75 0.16 -1.51 16 5 C -0.12 -1.46 5.97 30.80 0.18 -1.28 16 6 C -0.04 -0.84 6.33 30.06 0.19 -0.65 16 7 C 0.26 9.62 7.72 138.37 1.07 10.69 16 8 N -0.58 -28.55 11.18 -179.30 -2.01 -30.55 16 9 C 0.24 12.92 7.34 138.48 1.02 13.93 16 10 C 0.12 7.08 5.60 29.10 0.16 7.24 16 11 C -0.53 -33.46 9.09 25.60 0.23 -33.23 16 12 H 0.04 2.71 7.74 -2.91 -0.02 2.68 16 13 C 0.01 0.59 5.46 84.66 0.46 1.05 16 14 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 15 Si 0.97 46.79 29.54 68.60 2.03 48.81 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 19 N -0.35 -17.60 12.44 -51.07 -0.64 -18.24 16 20 N -0.38 -14.26 3.77 -317.89 -1.20 -15.46 16 21 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 22 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 25 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 27 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -81.83 271.02 3.88 -77.95 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.09 Total: -1.63 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 4.31 Total: -3.11 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -3.55 Total: -122.02 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -81.83 3.88 -77.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261222256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.164 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds