Wall clock time and date at job start Mon Mar 30 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.72647 * 2 1 4 4 C 1.53466 * 109.73083 * 239.37075 * 2 1 3 5 5 C 1.53138 * 109.30589 * 191.58573 * 4 2 1 6 6 C 1.53322 * 109.57748 * 69.43606 * 5 4 2 7 7 N 1.46261 * 108.72497 * 309.69020 * 6 5 4 8 8 C 1.34693 * 128.84824 * 197.14220 * 7 6 5 9 9 C 1.50698 * 126.46241 * 359.85829 * 8 7 6 10 10 C 1.50698 * 109.47292 * 269.99903 * 9 8 7 11 11 H 1.07995 * 120.00207 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99809 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00156 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99883 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47415 * 59.99583 * 14 12 10 16 16 H 1.48495 * 109.47086 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46676 * 299.99870 * 14 12 10 18 18 N 1.30835 * 107.06883 * 179.83913 * 8 7 6 19 19 N 1.28910 * 109.74449 * 0.03743 * 18 8 7 20 20 C 1.29841 * 109.47737 * 0.03661 * 19 18 8 21 21 H 1.09001 * 109.47268 * 180.62856 * 1 2 3 22 22 H 1.08999 * 109.47133 * 300.63446 * 1 2 3 23 23 H 1.09008 * 109.47251 * 60.63479 * 1 2 3 24 24 H 1.09002 * 109.49697 * 311.52854 * 4 2 1 25 25 H 1.08991 * 109.50081 * 71.62989 * 4 2 1 26 26 H 1.09004 * 109.45531 * 189.46506 * 5 4 2 27 27 H 1.09006 * 109.44907 * 309.39421 * 5 4 2 28 28 H 1.09000 * 109.58143 * 189.93523 * 6 5 4 29 29 H 1.08998 * 109.73948 * 69.54995 * 6 5 4 30 30 H 1.08999 * 109.47325 * 30.00297 * 9 8 7 31 31 H 1.09008 * 109.47049 * 149.99832 * 9 8 7 32 32 H 0.96999 * 119.99927 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0260 0.0000 4 6 2.0481 -0.7360 -1.2430 5 6 3.5517 -0.9850 -1.0939 6 6 3.7935 -2.0265 0.0050 7 7 3.0523 -1.6276 1.2012 8 6 3.2084 -2.0481 2.4712 9 6 4.2120 -3.0591 2.9629 10 6 3.6090 -4.4386 2.8969 11 1 2.6002 -4.5702 2.5347 12 6 4.3454 -5.5328 3.2990 13 7 5.5741 -5.3726 3.7396 14 14 3.5983 -7.2429 3.2165 15 1 3.2296 -7.5549 1.8122 16 1 4.5867 -8.2388 3.7023 17 1 2.3841 -7.2942 4.0701 18 7 2.3246 -1.4130 3.1974 19 7 1.6312 -0.6251 2.4490 20 6 2.0400 -0.7238 1.2206 21 1 -0.3634 -1.0276 0.0113 22 1 -0.3633 0.5236 0.8842 23 1 -0.3634 0.5040 -0.8957 24 1 1.5297 -1.6895 -1.3437 25 1 1.8661 -0.1272 -2.1285 26 1 3.9541 -1.3532 -2.0377 27 1 4.0493 -0.0527 -0.8266 28 1 4.8580 -2.0754 0.2341 29 1 3.4466 -3.0036 -0.3311 30 1 5.1027 -3.0215 2.3359 31 1 4.4833 -2.8301 3.9936 32 1 6.0923 -6.1424 4.0221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:01 Heat of formation + Delta-G solvation = 31.988261 kcal Electronic energy + Delta-G solvation = -15149.496185 eV Core-core repulsion = 12723.541280 eV Total energy + Delta-G solvation = -2425.954905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.15092 -38.36247 -36.04819 -35.00638 -32.28812 -32.09970 -29.12224 -27.73733 -25.58488 -24.05283 -23.51167 -21.63466 -20.33063 -18.73712 -17.66776 -17.27399 -16.64673 -16.07793 -15.52092 -15.05254 -14.65450 -14.52147 -14.30410 -13.80137 -13.68013 -13.00605 -12.86261 -12.71835 -12.51058 -12.44198 -12.09966 -12.03676 -11.84399 -11.72619 -11.64166 -11.17171 -10.89952 -10.68419 -9.85509 -8.30698 -6.44398 1.01700 1.37079 1.40637 1.48816 1.73020 1.95513 2.36795 3.01898 3.30012 3.56898 3.70825 3.73446 3.92141 4.20477 4.32289 4.34922 4.49441 4.56663 4.71546 4.83848 4.89545 5.00804 5.06578 5.08276 5.18936 5.29564 5.33282 5.40644 5.42688 5.58762 5.93470 6.16660 6.60973 7.24295 7.88883 8.79531 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036764 B = 0.007880 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.422882 B = 3552.229755 C = 3692.082591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.001 4.001 3 H 0.114 0.886 4 C -0.116 4.116 5 C -0.123 4.123 6 C 0.094 3.906 7 N -0.470 5.470 8 C 0.210 3.790 9 C 0.112 3.888 10 C -0.535 4.535 11 H 0.043 0.957 12 C 0.019 3.981 13 N -0.919 5.919 14 Si 0.967 3.033 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.277 1.277 18 N -0.364 5.364 19 N -0.339 5.339 20 C 0.163 3.837 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.035 0.965 31 H 0.023 0.977 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 8.097 -15.784 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.021 4.021 3 H 0.132 0.868 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.028 4.028 7 N -0.160 5.160 8 C -0.059 4.059 9 C 0.073 3.927 10 C -0.574 4.574 11 H 0.062 0.938 12 C -0.181 4.181 13 N -0.558 5.558 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.203 1.203 18 N -0.204 5.204 19 N -0.177 5.177 20 C -0.106 4.106 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.121 0.879 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.645 8.448 -14.504 17.416 hybrid contribution 0.641 -1.503 -0.154 1.641 sum -4.005 6.946 -14.658 16.707 Atomic orbital electron populations 1.21697 0.91978 1.01848 1.03517 1.20115 0.97359 0.98600 0.86071 0.86850 1.21846 0.94633 1.01560 0.97348 1.21981 0.97832 0.98187 0.98079 1.22335 0.96982 1.00889 0.82598 1.46186 1.28411 1.32339 1.09088 1.25363 0.99973 0.98708 0.81823 1.17496 0.90012 0.89132 0.96090 1.20988 0.99795 0.91270 1.45344 0.93830 1.25777 0.95124 1.03332 0.93877 1.70019 1.10243 1.32589 1.42926 0.85478 0.78156 0.78209 0.79096 1.18750 1.19723 1.20256 1.74335 1.08125 1.10468 1.27443 1.73773 1.23467 1.19557 1.00928 1.25559 0.91263 0.95786 0.98000 0.94110 0.92994 0.87928 0.91742 0.85806 0.85671 0.90218 0.89022 0.89526 0.94698 0.95917 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.14 71.98 0.66 -2.15 16 2 C 0.00 -0.02 3.12 -11.35 -0.04 -0.05 16 3 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -1.90 5.28 30.80 0.16 -1.73 16 5 C -0.12 -2.14 5.94 30.75 0.18 -1.95 16 6 C 0.09 2.70 6.75 86.53 0.58 3.29 16 7 N -0.47 -18.66 3.11 -504.65 -1.57 -20.23 16 8 C 0.21 10.54 7.26 138.14 1.00 11.55 16 9 C 0.11 6.12 5.38 29.10 0.16 6.28 16 10 C -0.54 -30.85 9.09 25.60 0.23 -30.62 16 11 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 12 C 0.02 1.07 5.46 84.66 0.46 1.53 16 13 N -0.92 -53.49 13.29 21.45 0.28 -53.20 16 14 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 N -0.36 -19.46 12.23 -50.47 -0.62 -20.08 16 19 N -0.34 -15.85 12.13 -50.28 -0.61 -16.46 16 20 C 0.16 6.10 7.07 138.13 0.98 7.07 16 21 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.33 8.12 -2.38 -0.02 1.31 16 28 H 0.09 2.66 7.85 -2.39 -0.02 2.64 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.03 1.86 7.75 -2.39 -0.02 1.85 16 31 H 0.02 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -74.08 269.10 4.99 -69.09 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.10 Total: 1.91 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.38 Total: -6.79 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -2.51 Total: -109.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.08 4.99 -69.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.075 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds