Wall clock time and date at job start Mon Mar 30 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49626 * 2 1 4 4 C 1.53139 * 109.49822 * 239.93282 * 2 1 3 5 5 C 1.53316 * 109.58292 * 170.58569 * 4 2 1 6 6 N 1.46263 * 108.72857 * 50.28365 * 5 4 2 7 7 C 1.34691 * 128.84092 * 162.91298 * 6 5 4 8 8 C 1.50703 * 126.47068 * 0.12471 * 7 6 5 9 9 C 1.50696 * 109.46995 * 90.00124 * 8 7 6 10 10 H 1.07997 * 120.00012 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99842 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99806 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 90.00621 * 13 11 9 15 15 H 1.48503 * 109.47399 * 210.00111 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00717 * 13 11 9 17 17 N 1.30840 * 107.07018 * 180.39359 * 7 6 5 18 18 N 1.28909 * 109.73444 * 359.52359 * 17 7 6 19 19 C 1.29842 * 109.48388 * 0.42812 * 18 17 7 20 20 C 1.50798 * 128.52686 * 179.86297 * 19 18 17 21 21 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47163 * 300.06704 * 1 2 3 23 23 H 1.09008 * 109.47229 * 60.06919 * 1 2 3 24 24 H 1.08996 * 109.45834 * 50.54439 * 4 2 1 25 25 H 1.09002 * 109.45177 * 290.61607 * 4 2 1 26 26 H 1.09007 * 109.58930 * 290.51553 * 5 4 2 27 27 H 1.08994 * 109.59425 * 170.06094 * 5 4 2 28 28 H 1.09008 * 109.46837 * 330.00461 * 8 7 6 29 29 H 1.08991 * 109.47467 * 210.00594 * 8 7 6 30 30 H 0.97000 * 119.99838 * 359.97438 * 12 11 9 31 31 H 1.08993 * 109.73177 * 44.40335 * 20 19 18 32 32 H 1.08998 * 109.72884 * 283.72463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7233 -1.2493 5 6 3.5559 -0.5232 -1.3753 6 7 4.1818 -0.8576 -0.0963 7 6 5.4750 -1.1275 0.1663 8 6 6.6066 -1.1442 -0.8288 9 6 7.2214 0.2291 -0.9133 10 1 6.8319 1.0333 -0.3068 11 6 8.2811 0.4588 -1.7650 12 7 8.7550 -0.5205 -2.5039 13 14 9.0436 2.1609 -1.8692 14 1 10.1406 2.2735 -0.8747 15 1 9.5885 2.3765 -3.2337 16 1 8.0080 3.1857 -1.5821 17 7 5.5625 -1.3783 1.4475 18 7 4.3995 -1.2690 1.9928 19 6 3.5242 -0.9547 1.0868 20 6 2.0429 -0.7250 1.2515 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3634 0.5128 -0.8907 24 1 1.5467 -0.3172 -2.1317 25 1 1.8211 -1.7877 -1.1680 26 1 3.7677 0.5166 -1.6250 27 1 3.9472 -1.1759 -2.1556 28 1 6.2248 -1.4323 -1.8083 29 1 7.3621 -1.8613 -0.5080 30 1 8.3593 -1.4044 -2.4495 31 1 1.8617 -0.1103 2.1332 32 1 1.5318 -1.6818 1.3579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:15 Heat of formation + Delta-G solvation = 47.519004 kcal Electronic energy + Delta-G solvation = -15075.832761 eV Core-core repulsion = 12650.551320 eV Total energy + Delta-G solvation = -2425.281441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.59723 -37.57104 -34.35120 -33.37380 -31.09848 -29.86812 -28.03083 -26.16230 -23.82648 -23.37582 -21.30434 -20.42565 -19.23963 -17.13087 -16.18513 -15.89264 -14.92234 -14.54050 -14.14012 -13.81630 -13.71007 -13.36555 -12.68011 -12.50464 -12.16959 -11.85863 -11.83860 -11.18314 -11.13250 -10.93096 -10.72614 -10.67251 -10.54516 -10.16707 -9.59627 -9.49495 -9.10018 -8.49707 -8.09605 -6.51959 -4.24313 2.54532 3.11040 3.38738 3.41574 3.57160 3.62148 4.36340 4.44724 4.48355 4.53640 4.72605 5.18722 5.21889 5.24899 5.30720 5.42023 5.48257 5.54713 5.64333 5.66319 5.71444 5.85671 5.89822 6.07670 6.13543 6.55847 6.80003 6.96860 7.17557 7.56196 7.90023 8.27830 8.68290 9.45195 9.51011 10.87548 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.007701 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.328834 B = 3634.994758 C = 3927.782346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.109 3.891 6 N -0.471 5.471 7 C 0.240 3.760 8 C 0.085 3.915 9 C -0.595 4.595 10 H 0.051 0.949 11 C 0.023 3.977 12 N -0.905 5.905 13 Si 1.075 2.925 14 H -0.284 1.284 15 H -0.282 1.282 16 H -0.289 1.289 17 N -0.322 5.322 18 N -0.301 5.301 19 C 0.139 3.861 20 C -0.019 4.019 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.269 0.731 31 H 0.092 0.908 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 1.168 -0.161 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.166 4.166 5 C -0.014 4.014 6 N -0.163 5.163 7 C -0.027 4.027 8 C 0.046 3.954 9 C -0.634 4.634 10 H 0.069 0.931 11 C -0.182 4.182 12 N -0.541 5.541 13 Si 0.903 3.097 14 H -0.211 1.211 15 H -0.208 1.208 16 H -0.215 1.215 17 N -0.161 5.161 18 N -0.140 5.140 19 C -0.128 4.128 20 C -0.059 4.059 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.641 1.680 0.430 14.744 hybrid contribution -1.657 -0.546 -0.463 1.805 sum -16.298 1.134 -0.033 16.338 Atomic orbital electron populations 1.21783 0.93902 1.02148 1.02161 1.21295 0.96396 1.00137 0.93983 0.90312 1.21997 0.93619 1.01895 0.99102 1.21869 0.92745 1.03069 0.83714 1.45911 1.08346 1.52636 1.09409 1.25503 0.84925 0.96786 0.95494 1.17971 0.88069 1.00000 0.89390 1.21768 1.19595 0.94216 1.27819 0.93079 1.25883 0.94317 1.05373 0.92610 1.70781 1.41922 1.02680 1.38688 0.83445 0.75979 0.73621 0.76685 1.21067 1.20781 1.21510 1.74470 1.14517 1.22655 1.04469 1.73903 0.96118 1.17861 1.26137 1.24395 0.97654 1.07714 0.83073 1.20106 0.85279 1.01627 0.98863 0.92365 0.92167 0.92255 0.89319 0.90878 0.89220 0.88902 0.95510 0.93563 0.92015 0.89003 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.10 -1.04 2.74 -90.31 -0.25 -1.28 16 3 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 4 C -0.13 -1.37 5.24 -26.50 -0.14 -1.51 16 5 C 0.11 1.65 6.75 -4.01 -0.03 1.62 16 6 N -0.47 -9.35 3.11 -110.86 -0.35 -9.70 16 7 C 0.24 5.81 7.26 -155.45 -1.13 4.68 16 8 C 0.08 2.20 4.69 -29.04 -0.14 2.06 16 9 C -0.59 -16.81 9.09 -34.44 -0.31 -17.12 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 12 N -0.91 -26.65 13.65 55.43 0.76 -25.89 16 13 Si 1.08 24.99 29.90 -169.99 -5.08 19.91 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 17 N -0.32 -8.29 12.23 32.70 0.40 -7.89 16 18 N -0.30 -6.95 12.21 32.76 0.40 -6.55 16 19 C 0.14 2.66 7.75 -155.30 -1.20 1.45 16 20 C -0.02 -0.25 5.65 -27.60 -0.16 -0.40 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 24 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 25 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.09 1.36 7.85 -51.93 -0.41 0.96 16 28 H 0.03 0.67 7.62 -51.92 -0.40 0.27 16 29 H 0.05 1.27 8.01 -51.93 -0.42 0.85 16 30 H 0.27 7.83 7.22 -40.82 -0.29 7.53 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 267.84 15.07 4.04 4.04 Total: -1.00 -33.49 267.84 -7.46 -40.95 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.52 Total: -4.17 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.11 Total: -10.69 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 1.21 Total: -50.03 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.49 -7.46 -40.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.469 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds