Wall clock time and date at job start Mon Mar 30 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49626 * 2 1 4 4 C 1.53139 * 109.49822 * 239.93282 * 2 1 3 5 5 C 1.53316 * 109.58292 * 170.58569 * 4 2 1 6 6 N 1.46263 * 108.72857 * 50.28365 * 5 4 2 7 7 C 1.34691 * 128.84092 * 162.91298 * 6 5 4 8 8 C 1.50703 * 126.47068 * 0.12471 * 7 6 5 9 9 C 1.50696 * 109.46995 * 90.00124 * 8 7 6 10 10 H 1.07997 * 120.00012 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99842 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00069 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99806 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 90.00621 * 13 11 9 15 15 H 1.48503 * 109.47399 * 210.00111 * 13 11 9 16 16 H 1.48498 * 109.47295 * 330.00717 * 13 11 9 17 17 N 1.30840 * 107.07018 * 180.39359 * 7 6 5 18 18 N 1.28909 * 109.73444 * 359.52359 * 17 7 6 19 19 C 1.29842 * 109.48388 * 0.42812 * 18 17 7 20 20 C 1.50798 * 128.52686 * 179.86297 * 19 18 17 21 21 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47163 * 300.06704 * 1 2 3 23 23 H 1.09008 * 109.47229 * 60.06919 * 1 2 3 24 24 H 1.08996 * 109.45834 * 50.54439 * 4 2 1 25 25 H 1.09002 * 109.45177 * 290.61607 * 4 2 1 26 26 H 1.09007 * 109.58930 * 290.51553 * 5 4 2 27 27 H 1.08994 * 109.59425 * 170.06094 * 5 4 2 28 28 H 1.09008 * 109.46837 * 330.00461 * 8 7 6 29 29 H 1.08991 * 109.47467 * 210.00594 * 8 7 6 30 30 H 0.97000 * 119.99838 * 359.97438 * 12 11 9 31 31 H 1.08993 * 109.73177 * 44.40335 * 20 19 18 32 32 H 1.08998 * 109.72884 * 283.72463 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7233 -1.2493 5 6 3.5559 -0.5232 -1.3753 6 7 4.1818 -0.8576 -0.0963 7 6 5.4750 -1.1275 0.1663 8 6 6.6066 -1.1442 -0.8288 9 6 7.2214 0.2291 -0.9133 10 1 6.8319 1.0333 -0.3068 11 6 8.2811 0.4588 -1.7650 12 7 8.7550 -0.5205 -2.5039 13 14 9.0436 2.1609 -1.8692 14 1 10.1406 2.2735 -0.8747 15 1 9.5885 2.3765 -3.2337 16 1 8.0080 3.1857 -1.5821 17 7 5.5625 -1.3783 1.4475 18 7 4.3995 -1.2690 1.9928 19 6 3.5242 -0.9547 1.0868 20 6 2.0429 -0.7250 1.2515 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3634 0.5128 -0.8907 24 1 1.5467 -0.3172 -2.1317 25 1 1.8211 -1.7877 -1.1680 26 1 3.7677 0.5166 -1.6250 27 1 3.9472 -1.1759 -2.1556 28 1 6.2248 -1.4323 -1.8083 29 1 7.3621 -1.8613 -0.5080 30 1 8.3593 -1.4044 -2.4495 31 1 1.8617 -0.1103 2.1332 32 1 1.5318 -1.6818 1.3579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:15 Heat of formation + Delta-G solvation = 27.081960 kcal Electronic energy + Delta-G solvation = -15076.718978 eV Core-core repulsion = 12650.551320 eV Total energy + Delta-G solvation = -2426.167658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.25079 -38.67105 -36.24963 -34.99404 -32.73604 -31.23935 -29.50258 -27.59866 -25.49239 -24.95712 -22.51775 -22.13604 -20.41183 -19.20067 -17.73483 -17.41776 -16.05809 -15.88154 -15.59911 -15.52912 -15.09476 -14.71933 -14.19107 -13.85279 -13.50096 -13.31252 -13.02166 -12.75677 -12.59336 -12.32477 -12.07106 -11.95221 -11.81190 -11.69921 -11.28457 -11.19068 -10.97475 -10.66397 -9.91891 -8.78925 -6.53302 0.90766 1.50464 1.57858 1.62566 1.77314 1.84198 2.50125 3.04207 3.21699 3.52136 3.56474 3.65101 3.76173 4.14688 4.20764 4.29645 4.38477 4.63496 4.67961 4.71705 4.75722 4.81601 4.93224 5.04049 5.08408 5.16962 5.25994 5.30356 5.45208 5.68955 5.97871 6.02553 6.41677 7.24082 7.76769 8.60792 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036625 B = 0.007701 C = 0.007127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.328834 B = 3634.994758 C = 3927.782346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.095 3.905 6 N -0.468 5.468 7 C 0.213 3.787 8 C 0.096 3.904 9 C -0.607 4.607 10 H 0.035 0.965 11 C -0.020 4.020 12 N -0.923 5.923 13 Si 1.120 2.880 14 H -0.276 1.276 15 H -0.271 1.271 16 H -0.273 1.273 17 N -0.361 5.361 18 N -0.343 5.343 19 C 0.163 3.837 20 C -0.021 4.021 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.020 0.980 30 H 0.260 0.740 31 H 0.105 0.895 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.022 2.326 -0.801 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.026 4.026 6 N -0.159 5.159 7 C -0.056 4.056 8 C 0.056 3.944 9 C -0.646 4.646 10 H 0.054 0.946 11 C -0.219 4.219 12 N -0.558 5.558 13 Si 0.941 3.059 14 H -0.202 1.202 15 H -0.196 1.196 16 H -0.198 1.198 17 N -0.201 5.201 18 N -0.182 5.182 19 C -0.105 4.105 20 C -0.060 4.060 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.141 0.859 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.260 2.823 -0.217 17.491 hybrid contribution -0.937 -0.945 -0.239 1.352 sum -18.197 1.879 -0.456 18.299 Atomic orbital electron populations 1.21732 0.90901 1.03233 1.03325 1.21300 0.98632 0.99059 0.92308 0.91166 1.22054 0.89891 1.02775 1.00842 1.22322 0.95825 1.02792 0.81674 1.46145 1.06945 1.51487 1.11322 1.25040 0.86512 0.99086 0.94981 1.17657 0.88304 0.98347 0.90057 1.21936 1.20163 0.94774 1.27710 0.94617 1.27324 0.94514 1.08301 0.91759 1.70892 1.42469 1.02760 1.39725 0.82889 0.75874 0.69781 0.77387 1.20195 1.19611 1.19836 1.74329 1.16565 1.23715 1.05466 1.73804 0.96131 1.20671 1.27558 1.25568 0.99679 1.03493 0.81809 1.20544 0.80891 1.03634 1.00967 0.91307 0.91398 0.90828 0.85860 0.90116 0.89522 0.88979 0.95005 0.96197 0.93026 0.87625 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.17 71.98 0.66 -0.71 16 2 C -0.09 -1.61 2.74 -10.59 -0.03 -1.64 16 3 H 0.07 1.36 8.12 -2.38 -0.02 1.34 16 4 C -0.12 -2.10 5.24 30.75 0.16 -1.94 16 5 C 0.10 2.75 6.75 86.53 0.58 3.34 16 6 N -0.47 -18.52 3.11 -504.65 -1.57 -20.09 16 7 C 0.21 10.65 7.26 138.14 1.00 11.65 16 8 C 0.10 5.16 4.69 29.10 0.14 5.30 16 9 C -0.61 -35.18 9.09 25.60 0.23 -34.95 16 10 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 11 C -0.02 -1.11 5.46 84.65 0.46 -0.65 16 12 N -0.92 -55.08 13.65 21.45 0.29 -54.79 16 13 Si 1.12 49.92 29.90 68.60 2.05 51.97 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 N -0.36 -19.29 12.23 -50.46 -0.62 -19.91 16 18 N -0.34 -16.06 12.21 -50.28 -0.61 -16.68 16 19 C 0.16 6.09 7.75 138.14 1.07 7.16 16 20 C -0.02 -0.48 5.65 30.03 0.17 -0.31 16 21 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 24 H 0.12 1.43 8.12 -2.39 -0.02 1.41 16 25 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 26 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 27 H 0.09 2.65 7.85 -2.39 -0.02 2.63 16 28 H 0.03 1.65 7.62 -2.38 -0.02 1.63 16 29 H 0.02 1.16 8.01 -2.39 -0.02 1.14 16 30 H 0.26 15.58 7.22 -92.71 -0.67 14.91 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -75.16 267.84 5.19 -69.97 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.20 Total: 2.27 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.45 Total: -12.75 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -2.51 Total: -111.47 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -75.16 5.19 -69.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.049 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds