Wall clock time and date at job start Mon Mar 30 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.50697 * 109.46954 * 240.00041 * 2 1 3 5 5 H 1.08001 * 120.00527 * 275.01483 * 4 2 1 6 6 C 1.37884 * 119.99929 * 95.01863 * 4 2 1 7 7 N 1.31511 * 119.99941 * 184.87294 * 6 4 2 8 8 Si 1.86801 * 119.99984 * 4.86719 * 6 4 2 9 9 H 1.48497 * 109.46754 * 84.75314 * 8 6 4 10 10 H 1.48496 * 109.47051 * 204.74977 * 8 6 4 11 11 H 1.48496 * 109.47149 * 324.75330 * 8 6 4 12 12 C 1.50699 * 109.46906 * 120.00107 * 2 1 3 13 13 C 1.38110 * 120.40083 * 35.00120 * 12 2 1 14 14 C 1.39630 * 118.32942 * 180.02562 * 13 12 2 15 15 N 1.38543 * 120.52852 * 179.97438 * 14 13 12 16 16 C 1.46506 * 120.00335 * 4.99212 * 15 14 13 17 17 C 1.46502 * 119.99999 * 185.00018 * 15 14 13 18 18 N 1.32988 * 118.93925 * 0.24675 * 14 13 12 19 19 C 1.31745 * 120.68485 * 359.49640 * 18 14 13 20 20 N 1.31789 * 121.83211 * 0.51796 * 19 18 14 21 21 H 1.08999 * 109.47367 * 54.65319 * 1 2 3 22 22 H 1.09003 * 109.46953 * 174.64952 * 1 2 3 23 23 H 1.08996 * 109.47080 * 294.65120 * 1 2 3 24 24 H 0.96998 * 120.00371 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.84006 * 0.02562 * 13 12 2 26 26 H 1.08998 * 109.47041 * 180.02562 * 16 15 14 27 27 H 1.08997 * 109.46396 * 60.00565 * 16 15 14 28 28 H 1.08999 * 109.46965 * 300.01113 * 16 15 14 29 29 H 1.08996 * 109.46732 * 269.99503 * 17 15 14 30 30 H 1.09001 * 109.46966 * 29.99143 * 17 15 14 31 31 H 1.09000 * 109.47176 * 149.99578 * 17 15 14 32 32 H 1.08004 * 119.08499 * 180.26423 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2292 6 6 2.3606 0.0122 -2.3580 7 7 2.7070 -0.6130 -3.4619 8 14 2.3131 1.8792 -2.3175 9 1 3.5974 2.3954 -1.7798 10 1 2.1079 2.3990 -3.6933 11 1 1.1963 2.3272 -1.4473 12 6 2.0323 -0.7104 1.2305 13 6 1.3453 -1.7943 1.7411 14 6 1.8490 -2.4198 2.8833 15 7 1.1961 -3.5104 3.4343 16 6 0.0299 -4.0844 2.7583 17 6 1.6718 -4.0898 4.6930 18 7 2.9626 -1.9485 3.4370 19 6 3.5884 -0.9144 2.9129 20 7 3.1386 -0.3024 1.8359 21 1 -0.3634 0.5945 -0.8382 22 1 -0.3633 -1.0232 -0.0958 23 1 -0.3633 0.4286 0.9340 24 1 2.9383 -0.1047 -4.2550 25 1 0.4411 -2.1491 1.2689 26 1 -0.3465 -4.9281 3.3367 27 1 0.3177 -4.4247 1.7636 28 1 -0.7492 -3.3270 2.6719 29 1 2.4056 -4.8672 4.4807 30 1 2.1330 -3.3108 5.3001 31 1 0.8306 -4.5223 5.2347 32 1 4.4931 -0.5556 3.3813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:18 Heat of formation + Delta-G solvation = 51.222079 kcal Electronic energy + Delta-G solvation = -14927.738987 eV Core-core repulsion = 12502.618123 eV Total energy + Delta-G solvation = -2425.120864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.33190 -36.83219 -34.88851 -32.24720 -31.35413 -29.85235 -28.06413 -25.44876 -25.24754 -23.57205 -21.90822 -19.65813 -17.27493 -16.83922 -16.63988 -15.22022 -14.75367 -14.57490 -14.19091 -14.02697 -13.49730 -13.03508 -12.59606 -12.51769 -12.26460 -12.18582 -11.94221 -11.29253 -10.98821 -10.75714 -10.42924 -10.09281 -9.95126 -9.78766 -9.38499 -8.77100 -8.56443 -8.41797 -7.58137 -6.12574 -4.13262 1.79403 2.07191 3.06995 3.32368 3.38911 3.41611 4.40587 4.60865 4.77364 4.95828 5.05370 5.23136 5.28248 5.39488 5.53388 5.66014 5.73381 5.83954 5.99103 6.04849 6.27766 6.37709 6.52615 6.66410 6.89162 7.01228 7.17024 7.25040 7.56600 7.64315 8.00652 8.42009 8.89225 8.99414 9.48013 10.99808 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039883 B = 0.008028 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.876401 B = 3486.935855 C = 3741.640670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.879 3.121 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.263 1.263 12 C 0.249 3.751 13 C -0.287 4.287 14 C 0.423 3.577 15 N -0.616 5.616 16 C 0.099 3.901 17 C 0.104 3.896 18 N -0.598 5.598 19 C 0.324 3.676 20 N -0.559 5.559 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.025 0.975 24 H 0.266 0.734 25 H 0.138 0.862 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -4.036 13.071 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 H 0.073 0.927 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.706 3.294 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.188 1.188 12 C 0.108 3.892 13 C -0.314 4.314 14 C 0.183 3.817 15 N -0.332 5.332 16 C -0.045 4.045 17 C -0.039 4.039 18 N -0.323 5.323 19 C 0.034 3.966 20 N -0.278 5.278 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.072 -3.841 13.349 14.475 hybrid contribution -0.571 0.446 -0.492 0.876 sum -4.643 -3.395 12.857 14.085 Atomic orbital electron populations 1.22032 0.97533 1.00866 0.98929 1.18315 0.92604 0.96549 0.89684 0.92668 1.20676 1.44666 0.95172 0.93632 0.90834 1.25006 0.93908 0.98581 0.95089 1.69882 1.45462 1.36082 1.01735 0.86827 0.79580 0.86010 0.77026 1.19673 1.21510 1.18814 1.22044 0.86482 0.89316 0.91398 1.21991 1.06280 1.02727 1.00402 1.18470 0.88262 0.86159 0.88839 1.46046 1.31385 1.30993 1.24757 1.21657 0.86927 0.98099 0.97785 1.21519 0.98807 0.98641 0.84980 1.67801 1.10090 1.17835 1.36596 1.24501 0.96790 0.86480 0.88804 1.68290 1.15189 1.33635 1.10663 0.92914 0.93069 0.95567 0.92409 0.84470 0.90657 0.92162 0.92374 0.93693 0.90663 0.92197 0.79843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.46 37.16 0.31 -2.49 16 2 C 0.05 1.16 2.31 -92.92 -0.21 0.95 16 3 H 0.06 1.38 5.30 -51.93 -0.28 1.10 16 4 C -0.50 -14.14 8.84 -34.44 -0.30 -14.44 16 5 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 8 Si 0.88 21.62 26.99 -169.99 -4.59 17.03 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.13 6.82 56.52 0.39 -5.75 16 12 C 0.25 5.63 5.80 -82.33 -0.48 5.15 16 13 C -0.29 -5.72 8.49 -39.11 -0.33 -6.05 16 14 C 0.42 7.77 7.38 -154.78 -1.14 6.62 16 15 N -0.62 -8.96 3.38 -189.48 -0.64 -9.60 16 16 C 0.10 1.12 9.45 59.85 0.57 1.68 16 17 C 0.10 1.20 10.41 59.85 0.62 1.82 16 18 N -0.60 -11.12 9.31 -13.81 -0.13 -11.25 16 19 C 0.32 6.11 12.28 -92.20 -1.13 4.98 16 20 N -0.56 -12.43 10.37 -10.88 -0.11 -12.54 16 21 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.05 1.00 6.87 -51.93 -0.36 0.64 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.14 2.53 5.37 -52.49 -0.28 2.24 16 26 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 31 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.18 2.72 8.06 -52.48 -0.42 2.29 16 LS Contribution 269.43 15.07 4.06 4.06 Total: -1.00 -32.37 269.43 -7.04 -39.41 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.21 Total: -1.10 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.20 Total: 0.34 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.11 Total: -59.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.59 Total: 17.03 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.37 -7.04 -39.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.634 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds