Wall clock time and date at job start Mon Mar 30 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 C 1.50697 * 109.46954 * 240.00041 * 2 1 3 5 5 H 1.08001 * 120.00527 * 275.01483 * 4 2 1 6 6 C 1.37884 * 119.99929 * 95.01863 * 4 2 1 7 7 N 1.31511 * 119.99941 * 184.87294 * 6 4 2 8 8 Si 1.86801 * 119.99984 * 4.86719 * 6 4 2 9 9 H 1.48497 * 109.46754 * 84.75314 * 8 6 4 10 10 H 1.48496 * 109.47051 * 204.74977 * 8 6 4 11 11 H 1.48496 * 109.47149 * 324.75330 * 8 6 4 12 12 C 1.50699 * 109.46906 * 120.00107 * 2 1 3 13 13 C 1.38110 * 120.40083 * 35.00120 * 12 2 1 14 14 C 1.39630 * 118.32942 * 180.02562 * 13 12 2 15 15 N 1.38543 * 120.52852 * 179.97438 * 14 13 12 16 16 C 1.46506 * 120.00335 * 4.99212 * 15 14 13 17 17 C 1.46502 * 119.99999 * 185.00018 * 15 14 13 18 18 N 1.32988 * 118.93925 * 0.24675 * 14 13 12 19 19 C 1.31745 * 120.68485 * 359.49640 * 18 14 13 20 20 N 1.31789 * 121.83211 * 0.51796 * 19 18 14 21 21 H 1.08999 * 109.47367 * 54.65319 * 1 2 3 22 22 H 1.09003 * 109.46953 * 174.64952 * 1 2 3 23 23 H 1.08996 * 109.47080 * 294.65120 * 1 2 3 24 24 H 0.96998 * 120.00371 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.84006 * 0.02562 * 13 12 2 26 26 H 1.08998 * 109.47041 * 180.02562 * 16 15 14 27 27 H 1.08997 * 109.46396 * 60.00565 * 16 15 14 28 28 H 1.08999 * 109.46965 * 300.01113 * 16 15 14 29 29 H 1.08996 * 109.46732 * 269.99503 * 17 15 14 30 30 H 1.09001 * 109.46966 * 29.99143 * 17 15 14 31 31 H 1.09000 * 109.47176 * 149.99578 * 17 15 14 32 32 H 1.08004 * 119.08499 * 180.26423 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2292 6 6 2.3606 0.0122 -2.3580 7 7 2.7070 -0.6130 -3.4619 8 14 2.3131 1.8792 -2.3175 9 1 3.5974 2.3954 -1.7798 10 1 2.1079 2.3990 -3.6933 11 1 1.1963 2.3272 -1.4473 12 6 2.0323 -0.7104 1.2305 13 6 1.3453 -1.7943 1.7411 14 6 1.8490 -2.4198 2.8833 15 7 1.1961 -3.5104 3.4343 16 6 0.0299 -4.0844 2.7583 17 6 1.6718 -4.0898 4.6930 18 7 2.9626 -1.9485 3.4370 19 6 3.5884 -0.9144 2.9129 20 7 3.1386 -0.3024 1.8359 21 1 -0.3634 0.5945 -0.8382 22 1 -0.3633 -1.0232 -0.0958 23 1 -0.3633 0.4286 0.9340 24 1 2.9383 -0.1047 -4.2550 25 1 0.4411 -2.1491 1.2689 26 1 -0.3465 -4.9281 3.3367 27 1 0.3177 -4.4247 1.7636 28 1 -0.7492 -3.3270 2.6719 29 1 2.4056 -4.8672 4.4807 30 1 2.1330 -3.3108 5.3001 31 1 0.8306 -4.5223 5.2347 32 1 4.4931 -0.5556 3.3813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232274.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:18 Heat of formation + Delta-G solvation = 30.814177 kcal Electronic energy + Delta-G solvation = -14928.623940 eV Core-core repulsion = 12502.618123 eV Total energy + Delta-G solvation = -2426.005817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.80848 -38.09325 -36.62971 -34.19730 -32.92330 -31.40348 -29.07899 -27.34561 -26.55310 -25.18347 -23.35703 -21.28381 -19.20865 -18.29563 -18.21138 -16.49530 -16.34775 -16.18991 -15.50928 -15.44990 -14.93243 -14.78118 -14.37859 -14.04101 -13.47508 -13.21050 -13.06086 -12.85701 -12.79949 -12.60112 -11.99637 -11.80207 -11.77234 -11.45897 -11.22092 -10.75702 -10.39810 -9.98008 -8.83987 -8.31909 -6.36858 0.28096 0.54383 1.36314 1.40315 1.48877 1.92772 2.34808 3.00733 3.13451 3.45769 3.49597 3.91216 4.24244 4.37836 4.45920 4.49704 4.51424 4.73083 4.74038 4.77425 4.87080 4.91845 4.96297 4.99686 5.24650 5.49065 5.58668 5.59588 5.83685 6.22242 6.26425 6.57007 6.66489 7.27747 7.48237 8.84378 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039883 B = 0.008028 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.876401 B = 3486.935855 C = 3741.640670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.047 3.953 3 H 0.046 0.954 4 C -0.504 4.504 5 H 0.030 0.970 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.940 3.060 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.240 1.240 12 C 0.221 3.779 13 C -0.294 4.294 14 C 0.419 3.581 15 N -0.611 5.611 16 C 0.090 3.910 17 C 0.099 3.901 18 N -0.598 5.598 19 C 0.323 3.677 20 N -0.594 5.594 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.268 0.732 25 H 0.146 0.854 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 -3.991 15.238 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.027 3.973 3 H 0.064 0.936 4 C -0.542 4.542 5 H 0.048 0.952 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.764 3.236 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.163 1.163 12 C 0.081 3.919 13 C -0.321 4.321 14 C 0.176 3.824 15 N -0.325 5.325 16 C -0.052 4.052 17 C -0.043 4.043 18 N -0.324 5.324 19 C 0.034 3.966 20 N -0.314 5.314 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.164 0.836 26 H 0.132 0.868 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.211 -3.832 15.551 16.843 hybrid contribution -0.227 0.231 -1.027 1.076 sum -5.438 -3.602 14.524 15.922 Atomic orbital electron populations 1.21894 0.94884 1.01552 1.00261 1.18247 0.94646 0.95578 0.88801 0.93586 1.20827 1.44214 0.93429 0.95733 0.95202 1.25847 0.93746 1.03617 0.94577 1.70020 1.47549 1.38093 1.02650 0.85839 0.80176 0.79936 0.77656 1.19847 1.20800 1.16320 1.21872 0.87615 0.90610 0.91832 1.22017 1.06627 1.02306 1.01150 1.18750 0.88239 0.86974 0.88415 1.46458 1.31292 1.29377 1.25337 1.21924 0.85927 0.99479 0.97867 1.21735 1.00498 0.98326 0.83733 1.67945 1.10207 1.17787 1.36414 1.25188 0.97486 0.86078 0.87831 1.68246 1.15642 1.35193 1.12272 0.93083 0.92514 0.92882 0.92268 0.83612 0.86762 0.93222 0.91768 0.93291 0.91619 0.88439 0.76366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.46 71.98 0.61 -4.51 16 2 C 0.05 2.26 2.31 -12.29 -0.03 2.23 16 3 H 0.05 2.27 5.30 -2.38 -0.01 2.25 16 4 C -0.50 -29.10 8.84 25.60 0.23 -28.88 16 5 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 6 C 0.02 1.18 5.47 84.66 0.46 1.64 16 7 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 8 Si 0.94 44.81 26.99 68.60 1.85 46.67 16 9 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.24 -10.42 6.82 99.48 0.68 -9.74 16 12 C 0.22 10.00 5.80 42.42 0.25 10.24 16 13 C -0.29 -11.52 8.49 22.58 0.19 -11.32 16 14 C 0.42 14.74 7.38 133.16 0.98 15.73 16 15 N -0.61 -16.11 3.38 -753.40 -2.54 -18.66 16 16 C 0.09 1.78 9.45 127.77 1.21 2.99 16 17 C 0.10 1.96 10.41 127.77 1.33 3.29 16 18 N -0.60 -21.29 9.31 -197.61 -1.84 -23.13 16 19 C 0.32 11.81 12.28 180.90 2.22 14.03 16 20 N -0.59 -26.22 10.37 -188.35 -1.95 -28.18 16 21 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 2.17 6.87 -2.39 -0.02 2.15 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.15 5.27 5.37 -2.91 -0.02 5.25 16 26 H 0.11 1.37 7.79 -2.39 -0.02 1.36 16 27 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.06 1.22 7.79 -2.39 -0.02 1.20 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.45 7.48 -2.39 -0.02 1.44 16 31 H 0.10 1.23 7.92 -2.39 -0.02 1.21 16 32 H 0.22 6.03 8.06 -2.91 -0.02 6.01 16 Total: -1.00 -71.80 269.43 4.34 -67.46 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.08 Total: 9.16 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 7.45 Total: 5.44 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -6.04 Total: -128.73 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.85 Total: 46.67 kcal Total: -71.80 4.34 -67.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232274.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.275 kcal (2) G-P(sol) polarization free energy of solvation -71.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds